View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_32 (Length: 254)
Name: NF15205_low_32
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 8807298 - 8807438
Alignment:
| Q |
107 |
tagggtttcatttatttcatcaatttcattattccatcaacaaa-------agcaaagacataaataccttaaataatatatggtcaataccaagctgaa |
199 |
Q |
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| T |
8807298 |
tagggtttcatttatttcatcaatttcattattccatcaacaaaaaccaaaagcaaagacataaataccttaaataatatatggtcaataccaagctgaa |
8807397 |
T |
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| Q |
200 |
tatccttaaaagcctcacgagcttgtcttctagcaggaact |
240 |
Q |
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| T |
8807398 |
tatccttaaaagcctcacgagcttgtcttctagcaggaact |
8807438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 7085122 - 7084982
Alignment:
| Q |
107 |
tagggtttcatttatttcatcaatttcattattccatcaacaaaa-------gcaaagacataaataccttaaataatatatggtcaataccaagctgaa |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7085122 |
tagggtttgatttatttcatcaatttcattattccatcaacaaaaacaaaaagcaaagacacaaataccttaaataatatatggtcaataccaagctgaa |
7085023 |
T |
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| Q |
200 |
tatccttaaaagcctcacgagcttgtcttctagcaggaact |
240 |
Q |
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| T |
7085022 |
tatccttaaaagcctcacgagcttgtcttctagcaggaact |
7084982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 1400887 - 1400817
Alignment:
| Q |
165 |
taccttaaataatatatggtcaataccaagctgaatatccttaaaagcctcacgagcttgtcttctagcag |
235 |
Q |
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||||||||| | ||| || ||||| |||||||||| ||||||||| || |||||||||||||||||||||| |
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| T |
1400887 |
taccttaaagagtatgtgatcaattccaagctgaacatccttaaaggcttcacgagcttgtcttctagcag |
1400817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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