View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_33 (Length: 252)
Name: NF15205_low_33
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31221551 - 31221784
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacatggatctat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221551 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctttcattggactagaagttgtccaattattttctccactacatggatctat |
31221650 |
T |
|
| Q |
101 |
gttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgttttattatcctcatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31221651 |
gttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgttttaatatcctcatg |
31221750 |
T |
|
| Q |
201 |
ctagagacgaaaaacttaaaccgatagcgaaaat |
234 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
31221751 |
ctagagacgaaaaacttaaactgatagcgaaaat |
31221784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31182975 - 31183205
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccactacatggatcta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | | || || ||||| | ||||||||||||||||||||||||||||| |
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| T |
31182975 |
cagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttgactttcac-agaagatttccaattattttctccactacatggatctt |
31183073 |
T |
|
| Q |
100 |
tgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgttttattatcctcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
31183074 |
tgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacctgtgctgtatattaattcaaaaccaaaatttgttttaatatcctcat |
31183173 |
T |
|
| Q |
200 |
gctagagacgaaaaacttaaaccgatagcgaaaat |
234 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| |
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|
| T |
31183174 |
g---gagacgaaaaacttaaacagatagcgaaaat |
31183205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31201999 - 31202231
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccactacatggatcta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || ||||| | ||||||||||||||||| |||||||||||| |
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|
| T |
31201999 |
cagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttaacttgcac-agaagatttccaattattttctccagtacatggatcta |
31202097 |
T |
|
| Q |
100 |
tgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgttttattatcctcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
31202098 |
tgttgaagtcccaatccttcttcccaagtgtctttgctatctctttcataacttttactgtatattaattcaaaaccaaaatttgttttaatat-ctcat |
31202196 |
T |
|
| Q |
200 |
gctagagacgaaaaacttaaaccgatagcgaaaat |
234 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||| |
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|
| T |
31202197 |
gccagagacgaaaaactaaaattgatagcgaaaat |
31202231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31237333 - 31237506
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacatggatctat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||||| |||||| ||| ||| |||||| ||||||||||| |
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|
| T |
31237333 |
cagtggcattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactagaagatgtccagttactttgtccactgcatggatctat |
31237432 |
T |
|
| Q |
101 |
gttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaac |
175 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
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|
| T |
31237433 |
gctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactgtatatt-attcaaaac |
31237506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 31248232 - 31248387
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacatggatctat |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||| |||||| ||| ||| |||||| ||||||||||| |
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| T |
31248232 |
cagtggaattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactaga---tgtccagttactttgtccactgcatggatctat |
31248328 |
T |
|
| Q |
101 |
gttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactg |
159 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31248329 |
gctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactg |
31248387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36217064 - 36217208
Alignment:
| Q |
1 |
cagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacatggatctat |
100 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||||||||||||| |||| ||| | || ||||| |||||||||| |||||||||||||||||||| |
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| T |
36217064 |
cagtggcattgacaaaggtacaattgcatgtgacagcattttcactccctttcacttgaacagaagatgtccaattacgttctccactacatggatctac |
36217163 |
T |
|
| Q |
101 |
gttgaagtcccaatccttcttcccaagtgtcttagctacatcttt |
145 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| |||||| |
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|
| T |
36217164 |
actgaaatcccaatctttctttccaagtgtcttagctatatcttt |
36217208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 19974201 - 19974068
Alignment:
| Q |
14 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
112 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
19974201 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
19974103 |
T |
|
| Q |
113 |
atccttcttcccaagtgtcttagctacatctttca |
147 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
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|
| T |
19974102 |
atcctttttcccaagtgttttacctatgtctttca |
19974068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 20994293 - 20994160
Alignment:
| Q |
14 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
112 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
20994293 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
20994195 |
T |
|
| Q |
113 |
atccttcttcccaagtgtcttagctacatctttca |
147 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
20994194 |
atcctttttcccaagtgttttacctatgtctttca |
20994160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 21018632 - 21018765
Alignment:
| Q |
14 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
112 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21018632 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
21018730 |
T |
|
| Q |
113 |
atccttcttcccaagtgtcttagctacatctttca |
147 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
21018731 |
atcctttttcccaagtgttttacctatgtctttca |
21018765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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