View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15205_low_38 (Length: 240)
Name: NF15205_low_38
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 38319331 - 38319126
Alignment:
| Q |
20 |
attttattgtcatttcaaacatgtcattaatctataaaatcgtccattttttaagtgataataacctactccatactttggatatataatacctaacctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38319331 |
attttattgtcatttcaaacatgtcattaatctataaaatcgaccattttttaagtgataataacctactccatactttggatat---atacctaacctt |
38319235 |
T |
|
| Q |
120 |
caattcataatttagtggctaattaaaattgtac----nnnnnnnnnnnnnattgatgaaaacaacacacattcctcacaccaaaaagaatcaaagcatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38319234 |
caattcataatttagtggctaattaaaattgtactttttattttattttttattgatgaaaacaacacacattcctcacaccaaaaagaatcaaagcatg |
38319135 |
T |
|
| Q |
216 |
cgcacctat |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
38319134 |
cgcacctat |
38319126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University