View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_39 (Length: 239)
Name: NF15205_low_39
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 42743866 - 42744074
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42743866 |
aaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
42743965 |
T |
|
| Q |
119 |
tttctaatagaaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagtaca |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
42743966 |
tttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcata |
42744065 |
T |
|
| Q |
219 |
tagaataat |
227 |
Q |
| |
|
||||||||| |
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|
| T |
42744066 |
tagaataat |
42744074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 42753225 - 42753433
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
118 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42753225 |
aaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
42753324 |
T |
|
| Q |
119 |
tttctaatagaaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagtaca |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
42753325 |
tttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcata |
42753424 |
T |
|
| Q |
219 |
tagaataat |
227 |
Q |
| |
|
||||||||| |
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|
| T |
42753425 |
tagaataat |
42753433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 42734647 - 42734459
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
42734647 |
aaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttggg |
42734548 |
T |
|
| Q |
119 |
tttctaatagaaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaa |
207 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
42734547 |
tttctaataggaattggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgtaattaaaattcaaa |
42734459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 42769736 - 42769895
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||| | |
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|
| T |
42769736 |
aaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtg |
42769835 |
T |
|
| Q |
119 |
tttctaatagaaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttccta |
184 |
Q |
| |
|
| || || | |||||| ||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
42769836 |
gatttaccagca------tctgccaaatagcctttgtaaaaatatcttgctccaattagcttccta |
42769895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 42717238 - 42717326
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatg |
107 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
42717238 |
aaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactattaaatg |
42717326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 42762847 - 42762913
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttca |
85 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42762847 |
aaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttca |
42762913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 42762961 - 42763022
Alignment:
| Q |
139 |
tgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaa |
200 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
42762961 |
tgccagaaagcctttaaaaaaatatcttgctccaataagctttctacaaaattgtaataaaa |
42763022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
| Q |
149 |
cctttgttaaaatatcttgctccaataagcttccta |
184 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttccta |
42717406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 23040608 - 23040413
Alignment:
| Q |
19 |
aaatacacttgcatttgcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttggg |
118 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23040608 |
aaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttcatttggg |
23040509 |
T |
|
| Q |
119 |
tttctaatagaaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgag |
214 |
Q |
| |
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| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23040508 |
tctctaataggaattggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgag |
23040413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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