View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_43 (Length: 219)
Name: NF15205_low_43
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_43 |
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| [»] scaffold0562 (2 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8977 - 9099
Alignment:
| Q |
1 |
tgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgctaccgataatatatttc--atgtctttgatatttgc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8977 |
tgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgctaccgataatatatttcatatgtctttgatatttgc |
9076 |
T |
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| Q |
99 |
ttcccaataaaattaaaatgctc |
121 |
Q |
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||||||||||||||||||||||| |
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| T |
9077 |
ttcccaataaaattaaaatgctc |
9099 |
T |
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Target: scaffold0562; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 9139 - 9186
Alignment:
| Q |
161 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9139 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
9186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 3878141 - 3878263
Alignment:
| Q |
1 |
tgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgctaccgataatatatttc--atgtctttgatatttgc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3878141 |
tgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgctaccgataatatatttcatatgtctttgatatttgc |
3878240 |
T |
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| Q |
99 |
ttcccaataaaattaaaatgctc |
121 |
Q |
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| T |
3878241 |
ttcccaataaaattaaaatgctc |
3878263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 3878303 - 3878350
Alignment:
| Q |
161 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878303 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
3878350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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