View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_6 (Length: 634)
Name: NF15205_low_6
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 16 - 616
Target Start/End: Original strand, 16691051 - 16691652
Alignment:
| Q |
16 |
tattgcacatcatagctgctattgacaacactggtgcctaacaaatcatatcttgtgctaagcatgttcagtgatcaaccgaaactaaggatccctgatc |
115 |
Q |
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| T |
16691051 |
tattgcacatcatagctgctattgacaacactggtgcctaacaaatcatatcttgtgctaagcatgttcagtgatcaaccgaaactaaggatccctgatc |
16691150 |
T |
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| Q |
116 |
aaatgattaattgtcttttcttttattaatcgatgcaaggaaggatacttggttaacatccttgnnnnnnnnnnnnnnnnnnttt-acgaactttttcat |
214 |
Q |
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| T |
16691151 |
aaatgattaattgtcttttcttttataaatcgatgcaaggaaggatacttggttaacatccttgaaaaaacaggaaaaaaaattttacgaactttttcat |
16691250 |
T |
|
| Q |
215 |
gaattaaaatcagaaatcatgacacacgcgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcatttcgaacctgaagaaaa |
314 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16691251 |
gaattaaaatcaaaaatcatgacacacacgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcatttcgaacctgaagaaaa |
16691350 |
T |
|
| Q |
315 |
tcactcagatcaaggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16691351 |
tcactcagatcaaggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagtt |
16691450 |
T |
|
| Q |
415 |
aatatagtcacagatattttaacagcatcaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactga |
514 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16691451 |
aatattgtcacagatattttaacagcatgaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactga |
16691550 |
T |
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| Q |
515 |
gccttgattttggatggatgtatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtggctgaaaaatgtgcagt |
614 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
16691551 |
gccttgattttggatggatggatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtggttgaaaaatgtgtagt |
16691650 |
T |
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| Q |
615 |
at |
616 |
Q |
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| T |
16691651 |
at |
16691652 |
T |
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