View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15205_low_8 (Length: 598)
Name: NF15205_low_8
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 436 - 580
Target Start/End: Complemental strand, 6721546 - 6721402
Alignment:
| Q |
436 |
taaactaagaatattcccaatcttacttgattaagcgatatctgtnnnnnnntggtcaatacaagtacgcttttccttttctttacgatcataacctctg |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
6721546 |
taaactaagaatattcccaatcttacttgattaagcgatatccgtaaaaaaatggtcattacaagtacgctttcccttttctttacgatcataacctctg |
6721447 |
T |
|
| Q |
536 |
gtgagaaaacataataaggtatgtcaatacgatgcatacaagaaa |
580 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6721446 |
gtgagaaaacataataaggtatgtcaatacgatgcagataagaaa |
6721402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6721634 - 6721584
Alignment:
| Q |
20 |
aaagtcaacaaaaaattgaaactttgaatcacaaactaaattattttccca |
70 |
Q |
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| T |
6721634 |
aaagtcaacaaaaaattgaaactttgaatcacaaactaaattattttccca |
6721584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 6716412 - 6716310
Alignment:
| Q |
90 |
ataatgatatatatgagtgtaa-tgaacaatgaataactttcattgaacttaacattgaagaaactcaacaaaatactgaaacttcgaatcacaaactaa |
188 |
Q |
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|||||||||||| ||| ||||| |||||||||| |||||||||||||| | |||| || ||| |||||||| | |||||||| |||||||||||||| |
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| T |
6716412 |
ataatgatatatttgaatgtaaatgaacaatgattaactttcattgaaatcaacacagagtaaaaccaacaaaaaattgaaactttgaatcacaaactaa |
6716313 |
T |
|
| Q |
189 |
aaa |
191 |
Q |
| |
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||| |
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| T |
6716312 |
aaa |
6716310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 6716346 - 6716312
Alignment:
| Q |
25 |
caacaaaaaattgaaactttgaatcacaaactaaa |
59 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
6716346 |
caacaaaaaattgaaactttgaatcacaaactaaa |
6716312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 6716412 - 6716372
Alignment:
| Q |
220 |
ataatgatatattaggatgtaaatgaacaattattaacttt |
260 |
Q |
| |
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||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
6716412 |
ataatgatatatttgaatgtaaatgaacaatgattaacttt |
6716372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 42230090 - 42230135
Alignment:
| Q |
92 |
aatgatatatatgagtgt-aatgaacaatgaataactttcattgaa |
136 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
42230090 |
aatgatatatatgagtgtaaatgaataatgattaactttcattgaa |
42230135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 42230159 - 42230188
Alignment:
| Q |
25 |
caacaaaaaattgaaactttgaatcacaaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
42230159 |
caacaaaaaattgaaactttgaatcacaaa |
42230188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 42230807 - 42230844
Alignment:
| Q |
20 |
aaagtcaacaaaaaattgaaactttgaatcacaaacta |
57 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
42230807 |
aaagtcaataaaaaattgaaactttgaaccacaaacta |
42230844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 42230685 - 42230713
Alignment:
| Q |
33 |
aattgaaactttgaatcacaaactaaatt |
61 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
42230685 |
aattgaaactttgaatcacaaactaaatt |
42230713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 42230739 - 42230795
Alignment:
| Q |
88 |
gcataatgatatatatgagtgtaa-tgaacaatgaataactttcattgaacttaaca |
143 |
Q |
| |
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|||||||| |||||||| |||||| |||| ||||| |||||||||||||||| |||| |
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| T |
42230739 |
gcataatggtatatatgggtgtaaatgaaaaatgattaactttcattgaactcaaca |
42230795 |
T |
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