View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15205_low_9 (Length: 598)
Name: NF15205_low_9
Description: NF15205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15205_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 45270945 - 45271510
Alignment:
| Q |
18 |
aaagggggcactgttctgtatattggtaccggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaaca |
117 |
Q |
| |
|
||||| |||| |||||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270945 |
aaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaaca |
45271044 |
T |
|
| Q |
118 |
gcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcct |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271045 |
gcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagagcagcct |
45271144 |
T |
|
| Q |
218 |
ggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271145 |
ggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcg |
45271244 |
T |
|
| Q |
318 |
accagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271245 |
accagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttg |
45271344 |
T |
|
| Q |
418 |
aattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271345 |
aattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttga |
45271444 |
T |
|
| Q |
518 |
tcttcttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271445 |
tcttcttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactg |
45271510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 59 - 581
Target Start/End: Original strand, 45282760 - 45283282
Alignment:
| Q |
59 |
tcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
158 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282760 |
tctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
45282859 |
T |
|
| Q |
159 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282860 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
45282959 |
T |
|
| Q |
259 |
acattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaa |
358 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45282960 |
gcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggtatccttgatcgtcaa |
45283059 |
T |
|
| Q |
359 |
cagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaag |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45283060 |
cagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaag |
45283159 |
T |
|
| Q |
459 |
ggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttgcatcgtcaaatccttccata |
558 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283160 |
ggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttgcatcgtcaaatccttccata |
45283259 |
T |
|
| Q |
559 |
caaccttgtttgtaagagataac |
581 |
Q |
| |
|
||| ||||| ||||||||||||| |
|
|
| T |
45283260 |
caagcttgtctgtaagagataac |
45283282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 57 - 560
Target Start/End: Original strand, 45274517 - 45275020
Alignment:
| Q |
57 |
gttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccg |
156 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45274517 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacacca |
45274616 |
T |
|
| Q |
157 |
gccttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaa |
256 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45274617 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaa |
45274716 |
T |
|
| Q |
257 |
caacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatc |
356 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |
|
|
| T |
45274717 |
cagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcgtc |
45274816 |
T |
|
| Q |
357 |
aacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtca |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45274817 |
aacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtca |
45274916 |
T |
|
| Q |
457 |
agggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttgcatcgtcaaatccttcca |
556 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274917 |
agggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttgcatcgtcaaatccttcca |
45275016 |
T |
|
| Q |
557 |
taca |
560 |
Q |
| |
|
|||| |
|
|
| T |
45275017 |
taca |
45275020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 73 - 583
Target Start/End: Original strand, 45294162 - 45294672
Alignment:
| Q |
73 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
172 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
45294162 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45294261 |
T |
|
| Q |
173 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |
|
|
| T |
45294262 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45294361 |
T |
|
| Q |
273 |
attttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaa |
372 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294362 |
atttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaa |
45294461 |
T |
|
| Q |
373 |
ttaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtga |
472 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
45294462 |
ttaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaa |
45294561 |
T |
|
| Q |
473 |
ccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgta |
572 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
45294562 |
ccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgta |
45294661 |
T |
|
| Q |
573 |
agagataactg |
583 |
Q |
| |
|
||||||||||| |
|
|
| T |
45294662 |
agagataactg |
45294672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 73 - 583
Target Start/End: Original strand, 45303122 - 45303632
Alignment:
| Q |
73 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
172 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
45303122 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45303221 |
T |
|
| Q |
173 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |
|
|
| T |
45303222 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45303321 |
T |
|
| Q |
273 |
attttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaa |
372 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303322 |
atttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaa |
45303421 |
T |
|
| Q |
373 |
ttaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggcggtga |
472 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
45303422 |
ttaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaa |
45303521 |
T |
|
| Q |
473 |
ccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgta |
572 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
45303522 |
ccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgta |
45303621 |
T |
|
| Q |
573 |
agagataactg |
583 |
Q |
| |
|
||||||||||| |
|
|
| T |
45303622 |
agagataactg |
45303632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 38588231 - 38588302
Alignment:
| Q |
133 |
gtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagag |
204 |
Q |
| |
|
|||||||| ||||||||||| || ||||| || ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
38588231 |
gtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
139 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
184 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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