View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_high_12 (Length: 270)
Name: NF15206_high_12
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 12032812 - 12033065
Alignment:
| Q |
14 |
ttctatgcacaacataaactaaacatgtacacctctctctacttggattcaaacattgtaagaatcgattttaaatatttataaatgttagtttttaata |
113 |
Q |
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| T |
12032812 |
ttctatgcacaacataaactaaacatgtacacctctctctacttggattcaaacattgtaagaatcgattttaaatatttataaatgttagttgttaata |
12032911 |
T |
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| Q |
114 |
tgttattacatcgactagagtttaaatcttaaacttttttgaagtctcttgaaatgtctcatctcaaatacttgattcaactattttagctacgttttga |
213 |
Q |
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| T |
12032912 |
tgtta---catcgactagagtttaaatcttaaacatttttgaagtctcttgaaatgtctcatctcaaatacttgattcaactattttagctacgttttga |
12033008 |
T |
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| Q |
214 |
atattactgatcgattatctctatgggttcgtttatacatttgtcttcatttctatt |
270 |
Q |
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| T |
12033009 |
agattactgatcgattctctctatgggttggtttatacatttgacttcatttttatt |
12033065 |
T |
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