View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15206_high_2 (Length: 677)

Name: NF15206_high_2
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15206_high_2
NF15206_high_2
[»] chr1 (26 HSPs)
chr1 (471-659)||(19092996-19093188)
chr1 (14-156)||(18180226-18180362)
chr1 (13-153)||(47541527-47541661)
chr1 (13-156)||(19895406-19895543)
chr1 (30-156)||(9880490-9880610)
chr1 (24-156)||(5683519-5683645)
chr1 (13-102)||(9880737-9880826)
chr1 (24-156)||(31436341-31436467)
chr1 (13-154)||(18179887-18180022)
chr1 (25-156)||(5683167-5683292)
chr1 (26-100)||(6751313-6751387)
chr1 (24-156)||(3591295-3591421)
chr1 (14-102)||(48155227-48155315)
chr1 (45-101)||(50359418-50359474)
chr1 (26-100)||(5172801-5172875)
chr1 (25-102)||(6751101-6751178)
chr1 (32-93)||(47541790-47541851)
chr1 (24-96)||(4288398-4288470)
chr1 (13-156)||(42723202-42723343)
chr1 (24-100)||(50359181-50359256)
chr1 (25-100)||(19895759-19895834)
chr1 (25-156)||(19976170-19976295)
chr1 (48-100)||(48155029-48155081)
chr1 (223-252)||(18470477-18470506)
chr1 (422-455)||(19093216-19093249)
chr1 (45-93)||(45664750-45664798)
[»] chr8 (21 HSPs)
chr8 (13-156)||(26997816-26997953)
chr8 (13-156)||(6297468-6297605)
chr8 (25-156)||(9800302-9800427)
chr8 (24-156)||(10047485-10047610)
chr8 (13-153)||(6297982-6298116)
chr8 (13-156)||(9800045-9800182)
chr8 (24-156)||(13315208-13315334)
chr8 (13-156)||(7344803-7344940)
chr8 (13-100)||(16662224-16662311)
chr8 (13-100)||(21006069-21006156)
chr8 (26-100)||(6297822-6297896)
chr8 (13-100)||(39234892-39234979)
chr8 (24-156)||(16662430-16662555)
chr8 (24-100)||(12489284-12489360)
chr8 (45-156)||(17914203-17914308)
chr8 (26-102)||(26243355-26243431)
chr8 (24-92)||(44024289-44024357)
chr8 (25-100)||(17915466-17915541)
chr8 (13-99)||(21005779-21005865)
chr8 (45-102)||(10047857-10047914)
chr8 (45-156)||(44148583-44148688)
[»] chr6 (13 HSPs)
chr6 (13-156)||(17157552-17157689)
chr6 (13-100)||(21113085-21113172)
chr6 (13-156)||(5974017-5974154)
chr6 (24-156)||(7645940-7646066)
chr6 (48-100)||(1869507-1869559)
chr6 (24-156)||(8710299-8710424)
chr6 (24-100)||(14712964-14713040)
chr6 (24-100)||(25932343-25932419)
chr6 (47-156)||(4510194-4510298)
chr6 (70-156)||(211447-211527)
chr6 (13-87)||(25932148-25932222)
chr6 (23-156)||(211678-211805)
chr6 (104-156)||(17157865-17157917)
[»] chr4 (33 HSPs)
chr4 (13-152)||(48553906-48554039)
chr4 (27-156)||(7118125-7118248)
chr4 (24-156)||(29691870-29691996)
chr4 (24-156)||(51906777-51906903)
chr4 (24-100)||(35166824-35166900)
chr4 (26-156)||(29691531-29691655)
chr4 (45-156)||(3296549-3296654)
chr4 (13-95)||(26168053-26168135)
chr4 (32-102)||(30608599-30608669)
chr4 (25-156)||(56106420-56106545)
chr4 (14-156)||(41510074-41510210)
chr4 (45-156)||(3296923-3297028)
chr4 (25-100)||(30608301-30608376)
chr4 (13-100)||(34129247-34129334)
chr4 (24-156)||(51906426-51906552)
chr4 (25-100)||(1791507-1791582)
chr4 (25-100)||(30952960-30953035)
chr4 (24-100)||(30047974-30048050)
chr4 (24-100)||(30062315-30062391)
chr4 (17-138)||(34129018-34129133)
chr4 (28-98)||(48760077-48760147)
chr4 (24-156)||(1791154-1791280)
chr4 (53-156)||(38759710-38759807)
chr4 (12-95)||(48759871-48759954)
chr4 (25-82)||(5545143-5545199)
chr4 (32-102)||(5544838-5544908)
chr4 (13-100)||(25916983-25917072)
chr4 (24-100)||(35469021-35469097)
chr4 (55-95)||(26984205-26984245)
chr4 (364-438)||(51580075-51580148)
chr4 (46-87)||(34397717-34397758)
chr4 (224-284)||(48194169-48194232)
chr4 (68-100)||(34294506-34294538)
[»] chr7 (25 HSPs)
chr7 (13-100)||(28838408-28838495)
chr7 (13-156)||(20543917-20544054)
chr7 (14-156)||(17075565-17075701)
chr7 (24-154)||(22948836-22948960)
chr7 (24-100)||(11974720-11974796)
chr7 (13-156)||(17075225-17075362)
chr7 (45-100)||(32092508-32092563)
chr7 (45-151)||(42750097-42750197)
chr7 (26-100)||(28852749-28852823)
chr7 (26-95)||(11975023-11975092)
chr7 (25-156)||(5029713-5029837)
chr7 (13-156)||(18152762-18152899)
chr7 (13-93)||(23548670-23548750)
chr7 (24-100)||(44803590-44803666)
chr7 (24-102)||(10466737-10466815)
chr7 (24-156)||(32092234-32092360)
chr7 (24-100)||(20544269-20544344)
chr7 (13-100)||(44803382-44803469)
chr7 (44-102)||(23548985-23549043)
chr7 (13-87)||(49053550-49053623)
chr7 (48-100)||(28854733-28854785)
chr7 (45-93)||(12908444-12908492)
chr7 (24-156)||(49053838-49053965)
chr7 (223-252)||(1532483-1532512)
chr7 (57-102)||(16755624-16755669)
[»] chr2 (20 HSPs)
chr2 (23-156)||(2191223-2191350)
chr2 (24-156)||(3691347-3691473)
chr2 (13-156)||(21182313-21182450)
chr2 (13-156)||(2517419-2517556)
chr2 (13-156)||(24093162-24093299)
chr2 (14-156)||(21216929-21217065)
chr2 (14-156)||(21265337-21265473)
chr2 (19-151)||(3691094-3691220)
chr2 (13-156)||(21217268-21217405)
chr2 (13-156)||(21264997-21265134)
chr2 (25-102)||(10706610-10706687)
chr2 (13-156)||(7083528-7083665)
chr2 (13-156)||(21267315-21267452)
chr2 (24-156)||(32114172-32114297)
chr2 (13-100)||(2606603-2606690)
chr2 (24-102)||(39729564-39729642)
chr2 (24-102)||(24093514-24093592)
chr2 (24-102)||(32860868-32860946)
chr2 (45-100)||(32114450-32114505)
chr2 (264-305)||(6739634-6739675)
[»] chr5 (24 HSPs)
chr5 (13-156)||(31588293-31588431)
chr5 (25-156)||(87220-87345)
chr5 (13-156)||(16284280-16284417)
chr5 (24-102)||(18339127-18339205)
chr5 (24-156)||(18999598-18999724)
chr5 (24-156)||(31176513-31176639)
chr5 (13-156)||(3935641-3935778)
chr5 (24-100)||(35373504-35373580)
chr5 (24-100)||(35383296-35383372)
chr5 (30-156)||(8750324-8750444)
chr5 (24-102)||(13987336-13987415)
chr5 (24-156)||(8648023-8648149)
chr5 (44-156)||(18999372-18999478)
chr5 (13-156)||(30415431-30415567)
chr5 (25-102)||(15978444-15978519)
chr5 (25-95)||(3935451-3935518)
chr5 (24-100)||(38834737-38834812)
chr5 (24-103)||(3406818-3406897)
chr5 (48-102)||(3406513-3406567)
chr5 (24-90)||(29751724-29751789)
chr5 (24-90)||(29752390-29752455)
chr5 (45-100)||(8750066-8750121)
chr5 (113-156)||(29750883-29750926)
chr5 (50-100)||(1650060-1650110)
[»] scaffold0009 (2 HSPs)
scaffold0009 (13-156)||(108069-108206)
scaffold0009 (13-156)||(107728-107865)
[»] chr3 (23 HSPs)
chr3 (24-156)||(22814302-22814428)
chr3 (45-156)||(51471341-51471446)
chr3 (24-100)||(9217876-9217952)
chr3 (13-156)||(25770327-25770464)
chr3 (13-89)||(26741251-26741327)
chr3 (24-100)||(44504148-44504224)
chr3 (26-156)||(50732231-50732355)
chr3 (26-156)||(50780500-50780624)
chr3 (48-153)||(44504368-44504467)
chr3 (24-156)||(37172434-37172560)
chr3 (13-156)||(9218461-9218597)
chr3 (25-156)||(13637739-13637864)
chr3 (24-100)||(27013465-27013541)
chr3 (13-156)||(43933446-43933583)
chr3 (45-100)||(37172137-37172192)
chr3 (24-156)||(38485703-38485828)
chr3 (46-99)||(43933708-43933761)
chr3 (55-100)||(51755903-51755948)
chr3 (24-100)||(13637531-13637607)
chr3 (24-100)||(34743428-34743504)
chr3 (104-156)||(45728349-45728401)
chr3 (70-156)||(132063-132143)
chr3 (223-252)||(51265668-51265697)
[»] scaffold0063 (2 HSPs)
scaffold0063 (13-156)||(34798-34935)
scaffold0063 (25-156)||(35151-35276)
[»] scaffold0933 (1 HSPs)
scaffold0933 (13-100)||(547-634)
[»] scaffold0384 (1 HSPs)
scaffold0384 (361-444)||(7342-7424)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 471 - 659
Target Start/End: Complemental strand, 19093188 - 19092996
Alignment:
Q  471 aatcaaataactttaagaccactgaagtaatttggcttattttttggttaaactaaacaaatgtccctaacactacggaatatgttgact-----ctatc 565  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     |||||    
T  19093188 aatcaaataactt-aagaccactgaagttatttggcttattttttggtcaaactaaacaaatgtccctaacactacggaatatgttgacttgactctatc 19093090  T
Q  566 atattttatccatacatgtccatgaaggaatatgtcgaacactaatttgatagtaagagcatcttcaacagtgcttttgttaagaggtagttta 659  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19093089 aaattttatccatacatgtccatgaaggaatatgtcgaccactaatttgatagtaagagcatcttcaatagtgcttttgttaagaggtagttta 19092996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 18180226 - 18180362
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaa 113  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |      |||||||| |    
T  18180226 atcagcattccgttagagaattaacaccactgactaattttgataacggagataaaatatgaggattttaaaaacatttaataa------aatgtatgga 18180319  T
Q  114 ctattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| | || |||||  || || |||||||||||    
T  18180320 ctattcttcaaagtggcgcaaaatataaagattaaaaacatat 18180362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 47541661 - 47541527
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  || |||||||||||| | | |||| ||||||||||||||||||||||||||||||||      || |     
T  47541661 catcagcattccgttagagaattaacaacagggattaattttgataatgaatataaaatgtgaggattttaaaaacatttaatgaaata------taggg 47541568  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaaca 153  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  47541567 actattcttcaaagggacataaaatgtaaggactaaaaaca 47541527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 19895543 - 19895406
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| ||||||||||| |  |||||||||||||||||||||||| |||||||| |||||||||||||||||      | ||||||||     
T  19895543 catcagcattccgttaaagaattaacagtatagactaattttgataacggagataaaatgtgagggttttaaaaacatttaat------taaatgtatgg 19895450  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| |  | ||||||| |||||||||||||||||    
T  19895449 actattcttcaaacgagcataaaatgtaaggactaaaaacatat 19895406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 9880610 - 9880490
Alignment:
Q  30 agaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaaggga 129  Q
    |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||      ||||||   ||| |||||||||||||    
T  9880610 agaattaacaacagtgactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatga------aatgtagagacttttcttcaaaggga 9880517  T
Q  130 cgtaaaatgcaaggactaaaaacatat 156  Q
     | |||||| |||||||||||||||||    
T  9880516 tgcaaaatgtaaggactaaaaacatat 9880490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 5683519 - 5683645
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||| |||||||||      |||||| | |||||||||||    
T  5683519 cgttagaaaattaacagcagtgactaattttgataccggagataaaatacgaggattttaaaaatatttaatga------aatgtagggactattcttca 5683612  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||  ||||||||||  |||||||||||||||||    
T  5683613 aaaagacgtaaaatataaggactaaaaacatat 5683645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 9880737 - 9880826
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||    
T  9880737 catcagcattccgttagagaattaacagcagggactaattttgataacagagataaaatgtgagaattttaaaaacatttaataaaatat 9880826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 31436341 - 31436467
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||  |||||||||||||||||| ||||| || ||     |||||||||||    
T  31436341 cgttagagaattaacagcagagactaattttgataacggagataaaatgtgataattttaaaaacatttaataaaata-tagtg-----actattcttca 31436434  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || ||||  |||||| ||||||||||| |||||    
T  31436435 aaaggacacaaaatgtaaggactaaaatcatat 31436467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 18180022 - 18179887
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||||| ||||| ||| |  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||      || |     
T  18180022 catcagcattccgttagaaaattagcagtagagactaattttgataacggagataaaatgtgaggattttaaaaacaattaatgaaata------taagg 18179929  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacat 154  Q
    |||||| |||||||||  | |||||| |||||||||||||||    
T  18179928 actatttttcaaaggggtgcaaaatgtaaggactaaaaacat 18179887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 5683292 - 5683167
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    ||||||||| ||||||||  ||||||||||||||| | |||||| |||||||||||||||| |||||||||||      |||||| | |||||| |||||    
T  5683292 gttagagaaataacagcagggactaattttgataatgaagataaaatgtgaggattttaaatacatttaatga------aatgtagggactatttttcaa 5683199  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    || |||| |||||| ||||| |||||||||||    
T  5683198 agagacgcaaaatgtaaggattaaaaacatat 5683167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6751313 - 6751387
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||  ||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||    
T  6751313 ttagagaattaacagcagagactaattttgataacaaagataaaatgtgaggattttaaaaaaatttaatgaaat 6751387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 3591295 - 3591421
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||| |||| ||||||  |||||||||| |||| |||||||| |||||||||||||||||||||||||| |      |||||||| |||||||||||    
T  3591295 cgttagataatttacagcagggactaatttttataatggagataaaatgtgaggattttaaaaacatttaataa------aatgtatggactattcttca 3591388  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || |  || |||||| |||||||||||| ||||    
T  3591389 aatgagcgcaaaatgtaaggactaaaaatatat 3591421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 48155227 - 48155315
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||  ||||| |||||||||| ||  ||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||    
T  48155227 atcagcattccgttaaagaattaacaacaaggactaattttgataacatagataaaatgtgaagattttaaaaacatttaatgaaatat 48155315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 50359418 - 50359474
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaata 101  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  50359418 gactaattttgataacagagataaaatgtgaggattttaaaaacatttaatgaaata 50359474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 5172875 - 5172801
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||| ||  |||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  5172875 ttagagaattaacaacaaggactaaatttgataacgtagataaaatgtaaggattttaaaaacatttaatgaaat 5172801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 6751178 - 6751101
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||||||||| |   |||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||    
T  6751178 gttagagaattaacatcggggactaattttgataacggagataaaatgcgatgatttttaaaacatttaatgaaatat 6751101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 47541790 - 47541851
Alignment:
Q  32 aattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacattta 93  Q
    |||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47541790 aattaacaacaaggactaattttgataacggagataaaatgtgaggattttaaaaacattta 47541851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 4288398 - 4288470
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatg 96  Q
    ||||| |||||||||||||  || |||||||||||||| | |||| |||||||||||||||||||||||||||    
T  4288398 cgttaaagaattaacagcatggattaattttgataacgaatataaaatgtgaggattttaaaaacatttaatg 4288470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 42723202 - 42723343
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  | ||||| |||||||| ||   |||||||||| ||||||| |||| |||||||||||||||||||||||||| || ||  ||| |||||    
T  42723202 catcagcattccattagataattaacaacataaactaattttgctaacggatataaaatgtgaggattttaaaaacatttaataaatta--aatatatga 42723299  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    | ||||||| |||||  || |||||  ||||| |||||||||||    
T  42723300 attattctttaaaggagcgcaaaatataaggattaaaaacatat 42723343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 50359256 - 50359181
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||  | ||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||    
T  50359256 cgttagagaattaacagcagag-ctaattttgataacggaaataaaatgtgaagatttaaaaaacatttaatgaaat 50359181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 19895759 - 19895834
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||| ||  ||||||||||||||||| |||||| || |||| |||||||||||||||||| ||||    
T  19895759 gttagagaattaacaacaaagactaattttgataacgaagataaaatatgagaattttaaaaacatttaataaaat 19895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 19976295 - 19976170
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    |||||| |||||||| ||  || ||||||||||||  ||||||| ||||| |||||||||||||||||||| ||| |      || ||||||||||||||    
T  19976295 gttagataattaacaacaaggattaattttgataatagagataaaatgtggggattttaaaaacatttaataaaaaa------taagaactattcttcaa 19976202  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||   || |||||| || ||||||||||||||    
T  19976201 agaagcgcaaaatgtaacgactaaaaacatat 19976170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 48155081 - 48155029
Alignment:
Q  48 taattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  48155081 taattttgatatcggagataaaatatgaggattttaaaaacatttaataaaat 48155029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 18470506 - 18470477
Alignment:
Q  223 aacaagttggttttaagttttttcgtacca 252  Q
    ||||||||||||||||||||||||||||||    
T  18470506 aacaagttggttttaagttttttcgtacca 18470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Complemental strand, 19093249 - 19093216
Alignment:
Q  422 taacttgttacaattaagtaaagacataagtgat 455  Q
    ||||||||||||||||||||| ||||||||||||    
T  19093249 taacttgttacaattaagtaaggacataagtgat 19093216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 45664798 - 45664750
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacattta 93  Q
    ||||| ||||||||||||||  || ||||| ||||||||||||||||||    
T  45664798 gactatttttgataacggagtaaaaatgtggggattttaaaaacattta 45664750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 26997816 - 26997953
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| | |||||||      ||||||||     
T  26997816 catcagcattccgttagagaattaacagcagggactaattttgataacggagataaaatgtgaggattttaaaaataattaatga------aatgtatgg 26997909  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| ||||| |||||| ||| |||||||||||||    
T  26997910 actattcttcaaatggacgcaaaatgtaagaactaaaaacatat 26997953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 6297605 - 6297468
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||| ||||||||||||||  |||||||||||||||| |||| || ||||||||||||||||||||||||||||      |||||| ||    
T  6297605 catcagcattccgttggagaattaacagcaaggactaattttgataacagagagaaaatgtgaggattttaaaaacatttaatga------aatgtagga 6297512  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||| || |||||| |||||||||| ||||||    
T  6297511 actattcttcaaaggggcgcaaaatgtaaggactaaagacatat 6297468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 9800302 - 9800427
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    ||||||||||||||||||   |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||      |||| ||||||||||||    
T  9800302 gttagagaattaacagcataaactaattttgataacgaagataaaatgtaaggattttaaaaacatttaatgaaata------tatggactattcttcaa 9800395  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||| || ||||||||||||| ||||| ||||    
T  9800396 aggggcgcaaaatgcaaggaccaaaaatatat 9800427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 10047610 - 10047485
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||||||       |||||| | |||||||||||    
T  10047610 cgttagagaattaacagcatggactaattttgataacggagataaaatgtgagaattttaaaaacatttaatg-------aatgtagggactattcttca 10047518  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || || || |||||| ||||| |||||||||||    
T  10047517 aaagggcgcaaaatgtaaggattaaaaacatat 10047485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 6297982 - 6298116
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||||||||||||||  |  ||||||||||||||||||| |||| ||||||||||||||||||||||||||||      |||||| |     
T  6297982 catcagcattccgttagagaattaacaatagggactaattttgataacggaaataaaatgtgaggattttaaaaacatttaatga------aatgtaagg 6298075  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaaca 153  Q
    ||||||||||||||||| | |||||| ||| ||||||||||    
T  6298076 actattcttcaaagggaagcaaaatgtaagcactaaaaaca 6298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 9800182 - 9800045
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||||| |      |||||| |     
T  9800182 catcagcattccgttagagaattaacagcaaagactaattttgataacggagatgaaatgtgaggattttaaaaacatttaataa------aatgtaagg 9800089  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    | |||||||||||| | || |||||  |||||||||||||||||    
T  9800088 attattcttcaaagaggcgcaaaatctaaggactaaaaacatat 9800045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 13315334 - 13315208
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||||||||||||| | || |||||||||||||| ||||||| |||||| |||||||||||||||||||||      |||||| | ||||||||| |    
T  13315334 cgttagagaattaacaggaatggctaattttgataacagagataaaatgtgatgattttaaaaacatttaatga------aatgtagggactattcttta 13315241  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || || || |||||| |||||||||||||||||    
T  13315240 aatgggcgcaaaatgtaaggactaaaaacatat 13315208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 7344803 - 7344940
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    ||||||||| ||||||||||||||| || | ||| |||||||||||||||| |||| || |||||||||||||||||| |||| |      ||||||||     
T  7344803 catcagcatttcgttagagaattaatagtaatgagtaattttgataacggacataaaatatgaggattttaaaaacatataataa------aatgtatgg 7344896  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    | |||||||||||||| |  |||||| |||||||||||||||||    
T  7344897 attattcttcaaaggggcacaaaatgtaaggactaaaaacatat 7344940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 16662311 - 16662224
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| |||||||||||||||||| |  |||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||    
T  16662311 catcagcatttcgttagagaattaacagtagggactaattttaataacagagataaaatgtgagaattttaaaaacatttaatgaaat 16662224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 21006069 - 21006156
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| || |||||||||||||||||  ||  |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21006069 catcagcatttcattagagaattaacagcagggatcaattttgataacggagataaaatgtgaggattttaaaaacatttaataaaat 21006156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6297822 - 6297896
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| |||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6297822 ttagagaatcaacaacaaggactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaat 6297896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 39234979 - 39234892
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||| |||| ||||||| ||||    
T  39234979 catcagcattccgttagagaattaacagcattgactaattttgataactgagataaaatgtgagaatttttaaaatatttaataaaat 39234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 16662430 - 16662555
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||| ||  || ||||||||| ||||||||||| || |||| ||||||||||||||||||||      |||||| |||||||||||||    
T  16662430 cgttagagaattaacaacagggattaattttgagaacggagataa-atatgagaattttaaaaacatttaatga------aatgtaggaactattcttca 16662522  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || |  || |||||| |||||||||||||||||    
T  16662523 aaagagcgcaaaatgtaaggactaaaaacatat 16662555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 12489360 - 12489284
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||  ||||||||||||||||  |||||| ||| |||||||||||||| ||||||||||||    
T  12489360 cgttagagaattaacagcagagactaattttgataacaaagataaaatgcgaggattttaaaaatatttaatgaaat 12489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 17914308 - 17914203
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |      |||||| | |||||||||||||| |||| |||||| || ||    
T  17914308 gactaattttgataacagagataaaatgtgaggattttaaaaacatttaataa------aatgtagggactattcttcaaagagacgcaaaatgtaaaga 17914215  T
Q  145 ctaaaaacatat 156  Q
    || |||||||||    
T  17914214 cttaaaacatat 17914203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 26243355 - 26243431
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||| |   ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26243355 ttagagaattaacaccgtggacaaattttgataatggagataaaatgtgaggattttaaaaacatttaatgaaatat 26243431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 44024357 - 44024289
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacattt 92  Q
    |||||||||||||||| || ||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  44024357 cgttagagaattaacaacattgactaattttgataacggggataaaatgtgatgattttaaaaacattt 44024289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 17915466 - 17915541
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||| |||||||||||||  |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  17915466 gttaaagaattaacagcaaagactaattttgataacagagataaaatgtgaggatttaaaaaacatttaataaaat 17915541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 21005865 - 21005779
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaa 99  Q
    ||||| ||| |||||||||||||||||| |  || ||||||||||||||||||||| || ||| ||||||||||| |||||||||||    
T  21005865 catcaacatttcgttagagaattaacaggaaagaataattttgataacggagataaaatatgaagattttaaaaaaatttaatgaaa 21005779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 10047857 - 10047914
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||||||||||||| || |||  |||||||||| ||||||||| ||||    
T  10047857 gactaattttgataacggagataaaatatgaaaattttaaaaatatttaatgatatat 10047914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 44148688 - 44148583
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    ||||| ||||||||||||||  || ||||||||||||||||||| |||| | |      |||||| | ||||||||||||| |  ||||||||| | |||    
T  44148688 gactatttttgataacggagtaaaaatgtgaggattttaaaaacgtttattaa------aatgtagggactattcttcaaaagagcgtaaaatgtaggga 44148595  T
Q  145 ctaaaaacatat 156  Q
    ||||||||||||    
T  44148594 ctaaaaacatat 44148583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 17157689 - 17157552
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||| |||||||||||||||||| |||||||||      ||||||||     
T  17157689 catcagcatttcgttagagaattaacagcagtgactaattttgataatagagataaaatgtgaggattttaaaaatatttaatga------aatgtatgg 17157596  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||| | | ||||||||| ||| |||||||||||||    
T  17157595 actattcttcaatgaggcgtaaaatgtaagaactaaaaacatat 17157552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 21113172 - 21113085
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||  |||||||||||||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  21113172 catcagcattccgttagagaattaacagcagagactaattttgataaaggagataaaatgtgagaattttaaaaacatttaatgaaat 21113085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 5974154 - 5974017
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  |||||||||| |||||||| |||| ||||| ||||||||||||||||||||||      |||||| |     
T  5974154 catcagcattccgttagagaattaacaacatggactaattttaataacggaaataaaatgtggggattttaaaaacatttaatga------aatgtaggg 5974061  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||||||  | |||||  |||||||||||||||||    
T  5974060 actattcttcaaaggggtgcaaaatataaggactaaaaacatat 5974017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 7645940 - 7646066
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||| |||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||||| |||      |||||| | |||||||||||    
T  7645940 cgttagaaaattaacagcagggactaattttgataacggagataaaatgtgagaatttttaaaacatttattga------aatgtaaggactattcttca 7646033  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||  |  |||||| |||||||||||||||||    
T  7646034 aaggagcacaaaatgtaaggactaaaaacatat 7646066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 1869559 - 1869507
Alignment:
Q  48 taattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1869559 taattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaat 1869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 8710299 - 8710424
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||| ||  |||||||||| |||||| | |||| ||||| ||||||||||||||||||||||      |||||| | |||||||||||    
T  8710299 cgttagagaattaacaacatggactaattttaataacgaa-ataaaatgtggggattttaaaaacatttaatga------aatgtaaggactattcttca 8710391  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||  | |||||  |||||||||||||||||    
T  8710392 aaggggtgcaaaatataaggactaaaaacatat 8710424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 14712964 - 14713040
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||  |||||||||||||||| ||||||| || |||| ||||  |||||||||||||||||    
T  14712964 cgttagagaattaacagcagagactaattttgataacagagataaaatatgagcatttctaaaacatttaatgaaat 14713040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 25932343 - 25932419
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||||||| |||||| || |||||    
T  25932343 cgttagagaattaacggcagagactaattttgataacggagataaaatgtgagaattttaataacattgaacgaaat 25932419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 4510298 - 4510194
Alignment:
Q  47 ctaattttgataacggagataagatgtg-aggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaaggac 145  Q
    |||||||||||||| ||||||| || || |||||||||||||||||||||||      |||||| | |||||||||||||  | ||||||||| ||||||    
T  4510298 ctaattttgataaccgagataaaatatggaggattttaaaaacatttaatga------aatgtagggactattcttcaaataggcgtaaaatgtaaggac 4510205  T
Q  146 taaaaacatat 156  Q
    |||||||||||    
T  4510204 taaaaacatat 4510194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 211527 - 211447
Alignment:
Q  70 atgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||||||| |||||||||||||      ||| | |||||||||||||||| || |||||| |||||||||||||||||    
T  211527 atgtgaggattttaaaatcatttaatgaaat------gtacggactattcttcaaaggggcgcaaaatgtaaggactaaaaacatat 211447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 25932222 - 25932148
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaa 87  Q
    |||||||||  |||||||||| ||| ||||  |||||||||||||||||||||||| |||  |||||||||||||    
T  25932222 catcagcattccgttagagaaataatagcatggactaattttgataacggagataaaatgcaaggattttaaaaa 25932148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 211678 - 211805
Alignment:
Q  23 tcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggatttt-aaaaacatttaatgaaatattaatgtatgaactattctt 121  Q
    |||||||||||||||||| |  || |||||| ||||| |||||||| |||||| |||||| ||||| |||||||||      |||||| | |||||||||    
T  211678 tcgttagagaattaacagtagggattaattt-gataatggagataaaatgtgaagattttaaaaaatatttaatga------aatgtagggactattctt 211770  T
Q  122 caaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||  | || |||||| ||||| |||||||||||    
T  211771 caaataggcgcaaaatgtaaggattaaaaacatat 211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 17157865 - 17157917
Alignment:
Q  104 aatgtatgaactattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||| | |||||||||||||| | || |||||| |||||||||||||||||    
T  17157865 aatgtagggactattcttcaaagtggcgcaaaatgtaaggactaaaaacatat 17157917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 48554039 - 48553906
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||      ||||||||     
T  48554039 catcagcattccgttaaagaattaacaacaatgactaattttgataacggagataaaatgtgaggattttaaaaaggtttaatga------aatgtatgg 48553946  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaac 152  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  48553945 actattcttcaaagggacgcaaaatgtaaggactaaaaac 48553906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 7118125 - 7118248
Alignment:
Q  27 tagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaag 126  Q
    ||||||||||||||||  ||||||||||||||| |||||||| || |||| ||||||||||||||||||||      |||||||| ||||||||||||||    
T  7118125 tagagaattaacagcatggactaattttgataatggagataaaatttgagaattttaaaaacatttaatga------aatgtatggactattcttcaaag 7118218  T
Q  127 ggacgtaaaatgcaaggactaaaaacatat 156  Q
    || || |||||| |||||||||||||||||    
T  7118219 gggcgcaaaatgtaaggactaaaaacatat 7118248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 29691870 - 29691996
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||||||||||| |||  |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||      ||||||| ||||    
T  29691870 cgttagagaattaaccgcatggactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatataaa------aactattattca 29691963  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||  |||||||||||| ||||||||||||||    
T  29691964 aaggagcgtaaaatgcaaagactaaaaacatat 29691996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 51906777 - 51906903
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||| | |||||||||||    
T  51906777 cgttagagaattaacagcagaaactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------gatgtagggactattcttca 51906870  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||  || |||||| |||||||||||||||||    
T  51906871 aaggagcgcaaaatgtaaggactaaaaacatat 51906903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 35166824 - 35166900
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35166824 cgttagagaattaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaat 35166900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 29691655 - 29691531
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaa 125  Q
    ||||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| | |||||||||||||    
T  29691655 ttagagaattaacagtagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagggactattcttcaaa 29691562  T
Q  126 gggacgtaaaatgcaaggactaaaaacatat 156  Q
     ||| | |||||  |||||||||||||||||    
T  29691561 tggatgcaaaatataaggactaaaaacatat 29691531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 3296654 - 3296549
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| | | |||||||||||||| || |||||| |||||    
T  3296654 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagggaatattcttcaaaggggcgcaaaatgtaagga 3296561  T
Q  145 ctaaaaacatat 156  Q
    ||||||||||||    
T  3296560 ctaaaaacatat 3296549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 26168135 - 26168053
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaat 95  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  26168135 catcagcattccgttagagaattaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaatatttaat 26168053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 30608599 - 30608669
Alignment:
Q  32 aattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30608599 aattaacaacagtgactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatat 30608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 56106420 - 56106545
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    ||||||||||||||| ||  |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||      || ||||||||||||||    
T  56106420 gttagagaattaacatcagggactaattttaataacggagataaaatgagaggattttaaaaacatttaataaaata------taggaactattcttcaa 56106513  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||| |  |||||| || ||||||||||||||    
T  56106514 aggggcacaaaatgtaaagactaaaaacatat 56106545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 41510210 - 41510074
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaa 113  Q
    |||||||| ||||||||||||||||| || |||||||||||||||| |||||||| || ||||||||||| ||| ||||||| |      |||||| | |    
T  41510210 atcagcatttcgttagagaattaacaacagtgactaattttgataagggagataaaatatgaggattttagaaatatttaataa------aatgtaggga 41510117  T
Q  114 ctattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||||| || |||||| ||||| |||||| ||||    
T  41510116 ctattcttcaaaggggcgcaaaatgtaaggattaaaaatatat 41510074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 3296923 - 3297028
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||      || ||| | |||||||||||||||| || |||||| |||||    
T  3296923 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaatga------aacgtagggactattcttcaaagggtcgcaaaatgtaagga 3297016  T
Q  145 ctaaaaacatat 156  Q
    ||||||| ||||    
T  3297017 ctaaaaatatat 3297028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 30608376 - 30608301
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  30608376 gttagagaattaatagcagagactaattttgataacggagataaaatgtgaggattttaaaaatatataatgaaat 30608301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 34129247 - 34129334
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||  |||| |||||||||||||   |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  34129247 catcagcattccgttggagaattaacagcttggactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaat 34129334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 51906552 - 51906426
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||| ||| |||||| ||  |||||||||||||||||||||||| |||||||||| |||||||||||||||||      || ||| | |||||||||||    
T  51906552 cgttaaagagttaacatcagggactaattttgataacggagataaaatgtgaggatattaaaaacatttaatga------aacgtagggactattcttca 51906459  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||| | || |||||| || ||||||||||||||    
T  51906458 aagaggcgcaaaatgtaaagactaaaaacatat 51906426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 1791507 - 1791582
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||||  |||||||||| ||||||||||||| |||| | ||||||||||||||||||| ||||    
T  1791507 gttagagaattaacagcagagactaattttaataacggagataaaatgtaaagattttaaaaacatttaataaaat 1791582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 30952960 - 30953035
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||| ||  |||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  30952960 gttagagaattaacaacaaggactaattttaataaccgagataaaatgttaggattttaaaaacatttaatgaaat 30953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 30047974 - 30048050
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||| |||||||| ||  |||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||    
T  30047974 cgttagataattaacaacagagactaattttaataacggagataaaatatgaggattttaaaaatatttaatgaaat 30048050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 30062315 - 30062391
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||| |||||||| ||  |||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||    
T  30062315 cgttagataattaacaacagagactaattttaataacggagataaaatatgaggattttaaaaatatttaatgaaat 30062391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 34129133 - 34129018
Alignment:
Q  17 agcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaacta 116  Q
    |||||| |||||||||||||||| ||  |||||| |||||||||| |||||| || |||| ||||||||||| |||||| |||||      || | ||||    
T  34129133 agcatcccgttagagaattaacaacatagactaactttgataacgaagataaaatatgagaattttaaaaacgtttaataaaata------tagggacta 34129040  T
Q  117 ttcttcaaagggacgtaaaatg 138  Q
    ||||||||||||||| ||||||    
T  34129039 ttcttcaaagggacgcaaaatg 34129018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 48760077 - 48760147
Alignment:
Q  28 agagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaa 98  Q
    |||||||||||| ||  || ||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  48760077 agagaattaacaacatggattaattttgataacagagataaaatgtgaagattttaaaaacatttaatgaa 48760147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 1791280 - 1791154
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||| ||  |||||||||||||||| |  ||||  | |||||||||| ||||||||||||||      |||||||| |||||||||||    
T  1791280 cgttagagaattaacaacatcgactaattttgataacaggtataaagtttgaggatttttaaaacatttaatga------aatgtatggactattcttca 1791187  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||| |  |||||||  || ||||||||||||||    
T  1791186 aagaggtgtaaaatttaacgactaaaaacatat 1791154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 38759807 - 38759710
Alignment:
Q  53 ttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaaggactaaaaac 152  Q
    |||||||||||||||| || |||||||||||||||||||||||||      |||||||  |||||||||||||| | || |||||  ||||||||||||     
T  38759807 ttgataacggagataaaatttgaggattttaaaaacatttaatga------aatgtatagactattcttcaaagaggcgcaaaatttaaggactaaaaaa 38759714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 48759954 - 48759871
Alignment:
Q  12 tcatcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaat 95  Q
    ||||||||||| ||||||| ||||||| |||   |||||||||||  || ||||||| ||||||| ||||||||||||||||||    
T  48759954 tcatcagcatcgcgttagaaaattaacggcagaaactaattttgacgacagagataaaatgtgagaattttaaaaacatttaat 48759871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 5545143 - 5545199
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggatttt 82  Q
    ||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||    
T  5545143 gttagagaattaacaacaa-gactaattttgataacggagataaaatgtgaggatttt 5545199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 5544908 - 5544838
Alignment:
Q  32 aattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||| |  |||||||||  |||| |||||||| ||||||| |||||||||| ||||||||||||||    
T  5544908 aattaacagtatggactaatttgaataaaggagataaaatgtgagaattttaaaaatatttaatgaaatat 5544838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 25916983 - 25917072
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgata--acggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| ||||||||||||||| ||||   ||||||||| |||  ||| |||||| || |||  |||||||||||||||||||||||    
T  25916983 catcagcatttcgttagagaattaaaagcagacactaattttcataacacgaagataaaatatgaaaattttaaaaacatttaatgaaat 25917072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 35469021 - 35469097
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagat-aagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||| |||||||||| ||  || ||||||||||||||||||| || || |||||||||||||||| |||||||||||    
T  35469021 cgttaaagaattaacaacatggattaattttgataacggagataaaaatttgaggattttaaaaac-tttaatgaaat 35469097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 26984245 - 26984205
Alignment:
Q  55 gataacggagataagatgtgaggattttaaaaacatttaat 95  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  26984245 gataactgagataaaatgtgaggattttaaaaacatttaat 26984205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 438
Target Start/End: Original strand, 51580075 - 51580148
Alignment:
Q  364 taaaagttacaattaaatatttaaaagacctaaatggtgcaaaaatttacttaaaaactaacttgttacaattaa 438  Q
    |||||||||||||||||||    ||||||||||||| | | |||| | |||||| ||||||||||||||||||||    
T  51580075 taaaagttacaattaaataacgtaaagacctaaatgttacgaaaaat-acttaagaactaacttgttacaattaa 51580148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 34397758 - 34397717
Alignment:
Q  46 actaattttgataacggagataagatgtgaggattttaaaaa 87  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  34397758 actaattttgataacgaagataaaatatgaggattttaaaaa 34397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 48194169 - 48194232
Alignment:
Q  224 acaagttggttttaagttttttcgtacca---aagatatttaagttaattaactgtaataagtt 284  Q
    |||||||||||||||||||||||||||||   | | | ||||||||| |||||||||| |||||    
T  48194169 acaagttggttttaagttttttcgtaccacttacgctctttaagttacttaactgtaacaagtt 48194232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 34294538 - 34294506
Alignment:
Q  68 agatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||| ||||||||||||||||||||||||    
T  34294538 agatgtgaagattttaaaaacatttaatgaaat 34294506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 28838495 - 28838408
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28838495 catcagcatttcgttagagaattaacaccaatgactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaat 28838408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 20544054 - 20543917
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    ||||| ||||||||||||||||||||||||   ||||||||||||||||||||||| || ||||||||||||||| |||||||||      |||||| |     
T  20544054 catcaccatctcgttagagaattaacagcagaaactaattttgataacggagataaaatatgaggattttaaaaaaatttaatga------aatgtaggg 20543961  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||| |  |||||| ||| | |||||||||||    
T  20543960 actattcttcaaaggggcacaaaatgtaagaattaaaaacatat 20543917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 17075565 - 17075701
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaa 113  Q
    ||||||||  |||||||||||||| ||||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||||      |||||| | |    
T  17075565 atcagcattccgttagagaattaatagcaaggactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatga------aatgtaggga 17075658  T
Q  114 ctattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| | || |||||| |||||||||||| ||||    
T  17075659 ctattcttcaaagaggcgcaaaatgtaaggactaaaaagatat 17075701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 22948836 - 22948960
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||| |||||||  |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||||   |||||||||||    
T  22948836 cgttagagcattaacaatagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagagactattcttca 22948929  T
Q  124 aagggacgtaaaatgcaaggactaaaaacat 154  Q
    ||||| || |||||| |||||||||||||||    
T  22948930 aagggtcgcaaaatgtaaggactaaaaacat 22948960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 11974796 - 11974720
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  11974796 cgttagagaattaacaacaaagactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaat 11974720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 17075362 - 17075225
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| ||||||||| |||  ||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||      |||||| |     
T  17075362 catcagcattccgttaaagaattaacggcaaggactaattttgttaacggggataaaatgtgaggattttaaaaacttttaatga------aatgtaggg 17075269  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||| | || |||||  |||||||||||||||||    
T  17075268 actattcttcaaagcggcgcaaaatataaggactaaaaacatat 17075225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 32092508 - 32092563
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32092508 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaat 32092563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 42750097 - 42750197
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||      |||||| | |||||||||||||||| ||||||||| || ||    
T  42750097 gactaattttaataacggagataaaatgtgaggattttaaaaacgtttaatga------aatgtagggactattcttcaaaggggcgtaaaatgtaaaga 42750190  T
Q  145 ctaaaaa 151  Q
    |||||||    
T  42750191 ctaaaaa 42750197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 28852823 - 28852749
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||| ||  | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28852823 ttagagaattaacaacagaggctaattttgataacggggataaaatgtgaggattttaaaaacatttaatgaaat 28852749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 11975023 - 11975092
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaat 95  Q
    |||||||||||||| ||  ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  11975023 ttagagaattaacaacagagactaattttgataacggaaataaaatgtgaggattttaaaaacatttaat 11975092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 5029713 - 5029837
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    |||||| |||||||| ||  |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||      || | ||||||||||||    
T  5029713 gttagataattaacaacatggactaattttgatagcggagataaaatgtgagga-tttaaaaacatttaatgaaata------tagggactattcttcaa 5029805  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    || |||| |||||| || ||||||||| ||||    
T  5029806 agagacgcaaaatgtaacgactaaaaatatat 5029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 18152899 - 18152762
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||    |||||||||||||||||||||| ||||||||||||||| |||||||||  |      |||||| |     
T  18152899 catcagcattccgttagagaattaacaacagaagctaattttgataacggagataaaatgtgaggattttaagaacatttaacaa------aatgtaggg 18152806  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||| || |||||| ||| ||| |||||||||    
T  18152805 actattcttcaaaggggcgcaaaatgtaagaactgaaaacatat 18152762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 23548750 - 23548670
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacattta 93  Q
    |||||||||  |||||||||||||||| ||  |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  23548750 catcagcattccgttagagaattaacaacaaagactaattttgataacagagataaaatgtgagtattttaaaaacattta 23548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 44803590 - 44803666
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||| ||| | |||||  |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  44803590 cgttagaaaatgatcagcatggactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaaat 44803666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 10466737 - 10466815
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||| ||||   |||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  10466737 cgttagagaattaatagcataaactaattttgataatggagataaaatgtgacgattttaaaaacatttaataaaatat 10466815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32092360 - 32092234
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||| |||||||||| ||  ||||||||||||||||  | | || ||||||||||||||||||||||||||||      |||| | | |||||||||||    
T  32092360 cgttatagaattaacaacaaagactaattttgataacaaacacaaaatgtgaggattttaaaaacatttaatga------aatgcagggactattcttca 32092267  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||| | || |||||| |||||||||||||||||    
T  32092266 aagaggcgcaaaatgtaaggactaaaaacatat 32092234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 20544269 - 20544344
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||| ||||  |||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  20544269 cgttagagaattaatagcaacgactgattttgataacgaagataaaatgtga-gattttaaaaacatttaatgaaat 20544344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 44803469 - 44803382
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||| ||| ||||||||||||||||| ||  |||||||||||||| | ||||||| || | ||||||||||||| ||||||| ||||    
T  44803469 catcaacatttcgttagagaattaacaacagagactaattttgatagcagagataaaatataaggattttaaaaatatttaataaaat 44803382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 23548985 - 23549043
Alignment:
Q  44 tgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||||||||| |||| || ||||||||| ||||| ||||||||||||||    
T  23548985 tgactaattttgataacggaaataaaatttgaggatttcaaaaagatttaatgaaatat 23549043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 49053623 - 49053550
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaa 87  Q
    |||||||||  |||||||||||||||| || |||||||||||||||||| |||||| || |||| ||||||||||    
T  49053623 catcagcattccgttagagaattaacaaca-tgactaattttgataacgaagataaaatatgagaattttaaaaa 49053550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 28854785 - 28854733
Alignment:
Q  48 taattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||| ||||    
T  28854785 taattttgataactgaaataaaatgtgaggattttaaaaacatttaataaaat 28854733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 12908492 - 12908444
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacattta 93  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||||    
T  12908492 gactaaatttggaaacggagataaaatgtgaggattttaaaaacattta 12908444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 49053838 - 49053965
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggaga-taagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttc 122  Q
    |||||||| ||||| ||||  ||||||||||||||| | | | ||| | ||||||||||||||||| ||||||||      |||||| | | |||| |||    
T  49053838 cgttagagcattaatagcatagactaattttgataatgaaaaataaaacgtgaggattttaaaaacttttaatga------aatgtagggattatttttc 49053931  T
Q  123 aaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||| ||| ||||||| |||||| ||||||||||    
T  49053932 aaagagacttaaaatgtaaggacgaaaaacatat 49053965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 1532512 - 1532483
Alignment:
Q  223 aacaagttggttttaagttttttcgtacca 252  Q
    ||||||||||||||||||||||||||||||    
T  1532512 aacaagttggttttaagttttttcgtacca 1532483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 16755624 - 16755669
Alignment:
Q  57 taacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||| || || ||||||||||||||| ||||||||||||||    
T  16755624 taacggagaaaaaatatgaggattttaaaaatatttaatgaaatat 16755669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 2191350 - 2191223
Alignment:
Q  23 tcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttc 122  Q
    |||||| |||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| | ||||||||||    
T  2191350 tcgttaaagaattaacaacatggactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtaaggactattcttc 2191257  T
Q  123 aaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||| || |||||| |||||||||||||||||    
T  2191256 aaaggggcgcaaaatgtaaggactaaaaacatat 2191223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 3691347 - 3691473
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||| |||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||||||      |||||| | |||||||||||    
T  3691347 cgttagaaaattaacagcatggactaattttgataacggagataaaatgtgaagattttaaaaacatttaatga------aatgtagggactattcttca 3691440  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||| || ||||| ||||||||||||||||||    
T  3691441 aaggggcgcaaaatacaaggactaaaaacatat 3691473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 21182450 - 21182313
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||||| ||||||| ||||||  ||||||||||||||||||||      |||||| |     
T  21182450 catcagcatttcgttagagaattaacaacagagactaattttgataacagagataaaatgtgaaaattttaaaaacatttaatga------aatgtaagg 21182357  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||| || |||||| |||||||||||||||||    
T  21182356 actattcttcaaaggggcgcaaaatgtaaggactaaaaacatat 21182313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 2517556 - 2517419
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| ||| |||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| |     
T  2517556 catcagcattccgttaaagagttaacaacaaagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtaggg 2517463  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||    
T  2517462 actattcttcaaagagacgcaaaatgtaaggactaaaaatatat 2517419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 24093299 - 24093162
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  |||| |||||||||||| ||| |||||||||||||||||||||||||||||||      |||||| |     
T  24093299 catcagcattccgttagagaattaacaacatggactgattttgataacgaagagaagatgtgaggattttaaaaacatttaatga------aatgtaggg 24093206  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||| || ||| || |||||||||||||||||    
T  24093205 actattcttcaaaggggcgcaaagtgtaaggactaaaaacatat 24093162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 21217065 - 21216929
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaa 113  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||||      |||||| | |    
T  21217065 atcagcattccgttagagaattaacagcaaggactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatga------aatgtaggga 21216972  T
Q  114 ctattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| | || |||||| |||||||||||| ||||    
T  21216971 ctattcttcaaagaggcgcaaaatgtaaggactaaaaagatat 21216929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 21265337 - 21265473
Alignment:
Q  14 atcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaa 113  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||||      |||||| | |    
T  21265337 atcagcattccgttagagaattaacagcaaggactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatga------aatgtaggga 21265430  T
Q  114 ctattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| | || |||||| |||||||||||| ||||    
T  21265431 ctattcttcaaagaggcgcaaaatgtaaggactaaaaagatat 21265473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 3691220 - 3691094
Alignment:
Q  19 catctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactatt 118  Q
    |||| ||||||||||||||| |||  |||||||||||||||||| ||||| ||||||||||||||||||||||||||||      |||||| ||||||||    
T  3691220 catcccgttagagaattaactgcagggactaattttgataacggtgataaaatgtgaggattttaaaaacatttaatga------aatgtaggaactatt 3691127  T
Q  119 cttcaaagggacgtaaaatgcaaggactaaaaa 151  Q
    ||||||| || || |||||  ||||||||||||    
T  3691126 cttcaaaagggcgcaaaatataaggactaaaaa 3691094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 21217268 - 21217405
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| ||||||||| |||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||      |||||| |     
T  21217268 catcagcattccgttaaagaattaacggcagggactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatga------aatgtaggg 21217361  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||| | || |||||| |||||||||||||||||    
T  21217362 actattcttcaaagcggcgcaaaatgtaaggactaaaaacatat 21217405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 21265134 - 21264997
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  ||||| ||||||||| |||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||      |||||| |     
T  21265134 catcagcattccgttaaagaattaacggcagggactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatga------aatgtaggg 21265041  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||| | || |||||| |||||||||||||||||    
T  21265040 actattcttcaaagcggcgcaaaatgtaaggactaaaaacatat 21264997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 10706610 - 10706687
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  10706610 gttagagaattaacagcagggactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatat 10706687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 7083665 - 7083528
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||   |||| |||| |||| |||||||| |||||||||||||||||| |||||||||      |||||| |     
T  7083665 catcagcattccgttagagaattaacaacagatactattttttataagggagataaaatgtgaggattttaaaaaaatttaatga------aatgtaggg 7083572  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||    
T  7083571 actattcttcaaatggacgtaaaatgtaaggattaaaaacatat 7083528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 21267315 - 21267452
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  | |||||||||||||| || |||||||||||||||| | | |||| ||||||||||||| ||||||||||||||      |||||| |     
T  21267315 catcagcattccattagagaattaacatcagtgactaattttgataatgaatataaaatgtgaggatttttaaaacatttaatga------aatgtaggg 21267408  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||  || |||||| |||||||||||||||||    
T  21267409 actattcttcaaaggatcgaaaaatgtaaggactaaaaacatat 21267452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32114297 - 32114172
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||||||||||||| |  |||||||||||||| | ||||||| |||||||||||||||||||||||||| | ||     |||| | |||||||||||    
T  32114297 cgttagagaattaacagtagcgactaattttgatatcagagataaaatgtgaggattttaaaaacatttaat-agat-----tgtagggactattcttca 32114204  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||| ||||||||| |||||||||||||||||    
T  32114203 aaggg-cgtaaaatgtaaggactaaaaacatat 32114172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 2606603 - 2606690
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||| || |||| |||||||||||||||||||||||    
T  2606603 catcagcatttcgttaaagaattaacagcatggactaattttgatagcggagataaaatatgagaattttaaaaacatttaatgaaat 2606690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 39729564 - 39729642
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||||| ||  ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  39729564 cgttagagaattaacaacatagactaatttcgataacggagataaaatgtgaggattttaaaaatatttaatgaaatat 39729642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 24093514 - 24093592
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||| |||||||| ||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  24093514 cgttaaagaattaagagcatggactaattttgataacggagataaaatgtaaggattttaaaaacatttaataaaatat 24093592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 32860946 - 32860868
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||| | || |  ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  32860946 cgttagagaattaataacaatagctaattttgatcacggagataaaatgttaggattttaaaaacatttaatgaaatat 32860868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 32114450 - 32114505
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||| |||||||  |||||| |||||||||| ||||||||||||    
T  32114450 gactaattttgataacagagataaagtgtgagaattttaaaaatatttaatgaaat 32114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 6739675 - 6739634
Alignment:
Q  264 gttaattaactgtaataagtttgttttatgtttttctgtatc 305  Q
    ||||||||| ||||||||||| |||||| |||||||||||||    
T  6739675 gttaattaattgtaataagttggttttaagtttttctgtatc 6739634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 31588293 - 31588431
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||| |||||||||      |||||| |     
T  31588293 catcagcattccgttagagaattaacagcagggactaattttgataacggagataaaatgttaggattttaaaaatatttaatga------aatgtaggg 31588386  T
Q  113 actattcttcaaa-gggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||    
T  31588387 actattcttcaaaggggacgcaaaatgtaaggactaaaaacatat 31588431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 87220 - 87345
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    ||||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| | ||||||||||||    
T  87220 gttagagaattaacaacaaagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagggactattcttcaa 87313  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||  |||||  |||||||||||||||||    
T  87314 agggacacaaaatataaggactaaaaacatat 87345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 16284417 - 16284280
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||           
T  16284417 catcagcattccgttagagaattaacaacaatgactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatataaa------g 16284324  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||   ||| |||||| |||||||||||||||||    
T  16284323 actattcttcaaaaaaacgcaaaatgtaaggactaaaaacatat 16284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 18339205 - 18339127
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||||||||||||||||||  ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  18339205 cgttagagaattaacagcatggactaattttgatgatggagataaaatgtgaggattttaaaaacatttaatgaaatat 18339127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 18999598 - 18999724
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||| || ||| |||||||||||||  |||||| |||||||||||||||||| |||||||||      |||||||| |||||||||||    
T  18999598 cgttagagaattaacaacaatgattaattttgataacaaagataaaatgtgaggattttaaaaatatttaatga------aatgtatggactattcttca 18999691  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||  || | |||||| |||||||||||||||||    
T  18999692 aaatgaagcaaaatgtaaggactaaaaacatat 18999724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 31176639 - 31176513
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||| ||| |||||||||  |||||||||||||||||| ||||| || ||| |||||||||||||||||||||      |||||||| ||| |||||||    
T  31176639 cgttaaagagttaacagcaaggactaattttgataacggggataaaatatgacgattttaaaaacatttaatga------aatgtatggactgttcttca 31176546  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||| |||||  |||||||||||||||||    
T  31176545 aagggacgcaaaatataaggactaaaaacatat 31176513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 3935641 - 3935778
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    ||||| ||| ||||||||||||||||||||  |||||||||| |||||  |||||| |||||||||||||||||||| |||||||      |||||| |     
T  3935641 catcaacatttcgttagagaattaacagcagagactaattttaataacaaagataaaatgtgaggattttaaaaacaattaatga------aatgtaggg 3935734  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    | |||||||||||||  ||||||||| |||||||||||| ||||    
T  3935735 attattcttcaaaggagcgtaaaatgaaaggactaaaaatatat 3935778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 35373580 - 35373504
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||| ||||||||||||    
T  35373580 cgttagagaattaacagcagtgactaattttaataacggggataaaatatgaggattttaaaaatatttaatgaaat 35373504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 35383372 - 35383296
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||| |||||||||||  |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  35383372 cgttagaaaattaacagcatggactaattttgataacggggataaaatatgaggattttaaaaacatttaatgaaat 35383296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 8750324 - 8750444
Alignment:
Q  30 agaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaaggga 129  Q
    |||||||||| ||  |||||||||||||||||||||||| || ||||||||||||| ||||||||| |      |||||| | ||||||||||||||  |    
T  8750324 agaattaacaacatggactaattttgataacggagataaaatatgaggattttaaacacatttaataa------aatgtagggactattcttcaaagaaa 8750417  T
Q  130 cgtaaaatgcaaggactaaaaacatat 156  Q
    || |||||| |||||||||||||||||    
T  8750418 cgcaaaatgtaaggactaaaaacatat 8750444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 13987415 - 13987336
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggatttt-aaaaacatttaatgaaatat 102  Q
    |||||||||||||||||||  |||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  13987415 cgttagagaattaacagcagagactaattttaataacggagataaaatgtgagaattttaaaaaacatttaatgaaatat 13987336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 8648023 - 8648149
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| || |||||||||||||||||| |||||||||      ||||||   ||||||||||     
T  8648023 cgttaaagaattaacaacatagactaattttgataacggagaaaaaatgtgaggattttaaaaatatttaatga------aatgtaaagactattcttcc 8648116  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || ||||| |||||| ||||||||||| |||||    
T  8648117 aaaggacgcaaaatgtaaggactaaaatcatat 8648149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 18999478 - 18999372
Alignment:
Q  44 tgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagg 143  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||      |||||||| ||||||||||||| |   | |||||| ||||    
T  18999478 tgactaattttgataacggagataaaatgagaggattttaaaaatatttaatga------aatgtatggactattcttcaaaagagtgcaaaatgtaagg 18999385  T
Q  144 actaaaaacatat 156  Q
    |||||||||||||    
T  18999384 actaaaaacatat 18999372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 30415431 - 30415567
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||| |||||||||||||   | ||||||||||||||||||| || |||||||||||||||||||| |||||||      |||||| |     
T  30415431 catcagcattccgttggagaattaacagctgagcctaattttgataacggagacaaaatgtgaggattttaaaaaca-ttaatga------aatgtaggg 30415523  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||| ||||  ||||||||| ||||||||||| |||||    
T  30415524 actattcttcgaaggagcgtaaaatgtaaggactaaaaccatat 30415567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 15978519 - 15978444
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    |||| |||||||||| || ||||||||||| ||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  15978519 gttaaagaattaacaacaatgactaattttaataaccgagataaaatgtgag--ttttaaaaacatttaatgaaatat 15978444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 3935518 - 3935451
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaat 95  Q
    ||||||||||||||||    ||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  3935518 gttagagaattaacaga---gactaatattgataatggagataaaatgtgaggattttaaaaacatttaat 3935451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 38834737 - 38834812
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||||||  ||||||||| |||||| ||||| | ||||| | |||||||||||||||||||||||    
T  38834737 cgttagagaattaacagcagagactaattt-gataacagagatcaaatgtgtgaattttaaaaacatttaatgaaat 38834812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 3406818 - 3406897
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatatt 103  Q
    ||||||| |||||| | ||  |||||||||||||||| ||||||| ||||||| |||||||||| ||||||| |||||||    
T  3406818 cgttagaaaattaatatcagggactaattttgataacagagataaaatgtgagaattttaaaaatatttaataaaatatt 3406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 3406567 - 3406513
Alignment:
Q  48 taattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatat 102  Q
    ||||||||||||| ||||||| || | ||||||||||||||||||||||||||||    
T  3406567 taattttgataacagagataaaatataaggattttaaaaacatttaatgaaatat 3406513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 29751789 - 29751724
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacat 90  Q
    ||||||||||||||  |||  |||||||||||||||| ||||||| ||||||| |||||||||||||    
T  29751789 cgttagagaattaagcgcagggactaattttgataac-gagataaaatgtgagaattttaaaaacat 29751724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 29752455 - 29752390
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacat 90  Q
    ||||||||||||||  |||  |||||||||||||||| ||||||| ||||||| |||||||||||||    
T  29752455 cgttagagaattaagcgcagggactaattttgataac-gagataaaatgtgagaattttaaaaacat 29752390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 8750121 - 8750066
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||| |||||| | || | ||||||||||| ||||||||||||    
T  8750121 gactaattttgataacgaagataaaacgttacgattttaaaaatatttaatgaaat 8750066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 29750926 - 29750883
Alignment:
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||    
T  29750926 actattcttcaaagggacgcaaaatgcaaagactgaaaacatat 29750883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 1650110 - 1650060
Alignment:
Q  50 attttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||||| || | || |||||||||||||||||| ||||    
T  1650110 attttgataacggagataaaatataagaattttaaaaacatttaataaaat 1650060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 108069 - 108206
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  | |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| ||    
T  108069 catcagcattccattagagaattaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagga 108162  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |  |||||||||| || || |||||| |||||||||||||||||    
T  108163 ataattcttcaaaagggcgcaaaatgtaaggactaaaaacatat 108206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 107865 - 107728
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  ||||| |||||||||||||||||| |||||||||||||||||| ||||| |||      |||||| |     
T  107865 catcagcattccgttagagaattaacaacatggactatttttgataacggagataaaatgtgaggattttaaaaatatttattga------aatgtaggg 107772  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||  || ||| || |||| ||||||||||||    
T  107771 actattcttcaaaggagcgcaaagtgtaaggtctaaaaacatat 107728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 22814428 - 22814302
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||||| |||||| ||||  ||||||||||||||||| |||||| ||||||||||||||||||||||||||||      |||||||| |||||||||||    
T  22814428 cgttagaaaattaatagcagggactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatga------aatgtatggactattcttca 22814335  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||| || |||||| ||| | |||||||||||    
T  22814334 aaggggcgcaaaatgtaagaattaaaaacatat 22814302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 51471446 - 51471341
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaagga 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||||  |||||||||||||||||||| |||||| ||| |    
T  51471446 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtagaaactattcttcaaagggacgcaaaatgtaagaa 51471353  T
Q  145 ctaaaaacatat 156  Q
    |||| |||||||    
T  51471352 ctaagaacatat 51471341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 9217952 - 9217876
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||| |||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  9217952 cgttaaagaattaacaacagtgactaattttaataacggagataaaatgtgaggattttaaaaacatttaatgaaat 9217876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 25770464 - 25770327
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  || ||||||||||||||  ||||| ||||||||||| ||||||||||||||||      |||||| |     
T  25770464 catcagcattccgttagagaattaacaacatggattaattttgataacgatgataaaatgtgaggattctaaaaacatttaatga------aatgtaggg 25770371  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||||   |||||| |||||||||||||||||    
T  25770370 actattcttcaaagggatacaaaatgtaaggactaaaaacatat 25770327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 26741251 - 26741327
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaaca 89  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  26741251 catcagcattccgttagagaattaacagcaatgactaattttgataacagagataaaatgtgaggattttaaaaaca 26741327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 44504224 - 44504148
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  44504224 cgttagagaattaacaacatggactaattttgataacggagataaaatgtgaggattttaaaaatatttaatgaaat 44504148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 50732355 - 50732231
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaa 125  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||| |||||||||      |||||||| |||||| ||||||    
T  50732355 ttagagaattaacagcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatga------aatgtatggactatttttcaaa 50732262  T
Q  126 gggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||  || |||||| |||||  ||||||||||    
T  50732261 ggagcgcaaaatgtaaggataaaaaacatat 50732231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 50780500 - 50780624
Alignment:
Q  26 ttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaa 125  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||| |||||||||      |||||||| |||||| ||||||    
T  50780500 ttagagaattaacagcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatga------aatgtatggactatttttcaaa 50780593  T
Q  126 gggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||  || |||||| |||||  ||||||||||    
T  50780594 ggagcgcaaaatgtaaggataaaaaacatat 50780624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 44504368 - 44504467
Alignment:
Q  48 taattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaaggacta 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||| | ||||||||||||||||  | |||||| ||||||||    
T  44504368 taattttgataacggagataaaatgtgaggattttaaaaacatttaatga------aatgtaaggactattcttcaaaggggtgcaaaatgtaaggacta 44504461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 37172434 - 37172560
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    |||||||||||||||||||  |||||||||||||||  ||||||| |||||  ||||||||||||||||||| |      | |||| ||| |||||||||    
T  37172434 cgttagagaattaacagcatggactaattttgataatagagataaaatgtggagattttaaaaacatttaataa------agtgtaggaattattcttca 37172527  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| ||||||| |||||| ||||    
T  37172528 aagggacgtaaaacgcaaggattaaaaatatat 37172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 9218461 - 9218597
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  |||||||||||||||| ||  ||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||      || |     
T  9218461 catcagcattccgttagagaattaacaacagagactaattt-gataacgaagataaaatgtgatgattttaaaaacatttaatgaaata------taggg 9218553  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||||||||||  || |||||| || ||||||||||||||    
T  9218554 actattcttcaaaggagcgcaaaatgtaatgactaaaaacatat 9218597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 13637739 - 13637864
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    |||| |||||||||| ||  ||||| |||||||||||||||||| |||||||||||||||||| |||||||||      ||||||   ||||||||||||    
T  13637739 gttaaagaattaacaacaaggactagttttgataacggagataaaatgtgaggattttaaaaatatttaatga------aatgtagagactattcttcaa 13637832  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||| || |||||| |||||||| ||||||||    
T  13637833 aggggcgcaaaatgtaaggactagaaacatat 13637864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 27013541 - 27013465
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  27013541 cgttagagaattaacaacatagactaattgtgataacggagataaaatgtaaggattttaaaaacatttaataaaat 27013465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 43933583 - 43933446
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||  | ||| |||||||||| ||  ||||||||||||||||| |||||| |||||||||||||||||| |||||||||      |||||| |     
T  43933583 catcagcattccattatagaattaacaacagggactaattttgataacgaagataaaatgtgaggattttaaaaatatttaatga------aatgtaggg 43933490  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||| || |  |||||| |||||||||||| ||||    
T  43933489 actattcttcaaacgggcacaaaatgtaaggactaaaaatatat 43933446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 37172192 - 37172137
Alignment:
Q  45 gactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37172192 gactaattttgataacggagataaactgtgaggattttaaaaacatttaatgaaat 37172137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 38485828 - 38485703
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttca 123  Q
    ||||| |||||||||||||  ||||||||||||||||||||| || |||  |||||||||||||||| |||| |      |||||||| |||||||||||    
T  38485828 cgttaaagaattaacagcaaagactaattttgataacggaga-aaaatgcaaggattttaaaaacatataataa------aatgtatggactattcttca 38485736  T
Q  124 aagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||| | |  |||||| ||||||||||| |||||    
T  38485735 aagaggcacaaaatgtaaggactaaaatcatat 38485703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 43933708 - 43933761
Alignment:
Q  46 actaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaa 99  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  43933708 actaattttgataacagagataaaatatgaggattttaaaaacatttaatgaaa 43933761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 51755903 - 51755948
Alignment:
Q  55 gataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  51755903 gataacggagataaaatgtgaggattttaaaaacatttaatgaaat 51755948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 13637607 - 13637531
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||||||||||||| | |  ||||||||||||||||| |||||| || ||| ||||||||||| ||||||||||||    
T  13637607 cgttagagaattaacggtaaagactaattttgataacgaagataaaatatgaagattttaaaaatatttaatgaaat 13637531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 34743428 - 34743504
Alignment:
Q  24 cgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    ||||| ||||||||| |||  ||||||||||||||||  | |||| ||||||||||||| |||||||||||||||||    
T  34743428 cgttaaagaattaaccgcagagactaattttgataacatatataaaatgtgaggatttttaaaacatttaatgaaat 34743504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 45728349 - 45728401
Alignment:
Q  104 aatgtatgaactattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    |||||||| ||||||||||||||||||  |||||| |||||||||||||||||    
T  45728349 aatgtatggactattcttcaaagggacacaaaatgtaaggactaaaaacatat 45728401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 132063 - 132143
Alignment:
Q  70 atgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||||||||||||||||||||||||      |||||| | |||||||||||||||   | |||||| |||||||||| ||||||    
T  132063 atgtgaggattttaaaaacatttaatga------aatgtaaggactattcttcaaaggagtgcaaaatgtaaggactaaatacatat 132143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 51265668 - 51265697
Alignment:
Q  223 aacaagttggttttaagttttttcgtacca 252  Q
    ||||||||||||||||||||||||||||||    
T  51265668 aacaagttggttttaagttttttcgtacca 51265697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 34935 - 34798
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatga 112  Q
    |||||||||| ||||||| |||||| ||||  |||||||||||||||||||||||| ||||||| | ||||||||||||||||||      ||||||||     
T  34935 catcagcatcccgttagaaaattaatagcagagactaattttgataacggagataaaatgtgagtactttaaaaacatttaatga------aatgtatgg 34842  T
Q  113 actattcttcaaagggacgtaaaatgcaaggactaaaaacatat 156  Q
    || ||| ||||||  |||| |||||  |||||||||||||||||    
T  34841 accattattcaaatagacgcaaaatataaggactaaaaacatat 34798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 35151 - 35276
Alignment:
Q  25 gttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaatattaatgtatgaactattcttcaa 124  Q
    |||||||| |||| ||||   ||||||||| ||||| ||||||| |||||||||||||||||||||| ||| |      ||||||   ||||||||||||    
T  35151 gttagagagttaagagcataaactaattttcataaccgagataaaatgtgaggattttaaaaacattcaataa------aatgtagagactattcttcaa 35244  T
Q  125 agggacgtaaaatgcaaggactaaaaacatat 156  Q
    ||||||| |||||| |||||||||||||||||    
T  35245 agggacgcaaaatgtaaggactaaaaacatat 35276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 634 - 547
Alignment:
Q  13 catcagcatctcgttagagaattaacagcactgactaattttgataacggagataagatgtgaggattttaaaaacatttaatgaaat 100  Q
    |||||||||  ||||||| || ||||| ||  ||||||||||||||||  | |||| ||||||  |||||||||||||||||||||||    
T  634 catcagcattccgttagaaaaataacaacatagactaattttgataacaaaaataaaatgtgaaaattttaaaaacatttaatgaaat 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 444
Target Start/End: Complemental strand, 7424 - 7342
Alignment:
Q  361 gtttaaaagttacaattaaatat-ttaaaagacctaaatggtgcaaaaatttacttaaaaactaacttgttacaattaagtaaag 444  Q
    |||||||||||| |||||||||  ||||||||  ||||| || ||||||  |  ||||||| |||||||||||||||||||||||    
T  7424 gtttaaaagttataattaaataacttaaaagatttaaatagtacaaaaaaat--ttaaaaaataacttgttacaattaagtaaag 7342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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