View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_high_6 (Length: 427)
Name: NF15206_high_6
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 45752152 - 45751741
Alignment:
| Q |
16 |
catatgacagtgacactatctgagttgatttggaataaggcagactaatgtttagggtttgtgatacttcatactaatatttgtacgctcgtttgtgcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
45752152 |
catatgacagtgacactatctgagttgatttggaataaggcagactaatgtttagggtttgtgatacttcatactaatatttgtacgcttgtttctgcta |
45752053 |
T |
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| Q |
116 |
ttcttttcctattttcgtcaatggaagacagaataaaggtgaaagatgaaaaattgcagaactaattcatttccttttttaagcatggatcctgtaaaat |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45752052 |
ttcttttcctatttgcgtcaatggaagacagaataaaggtgaaagatgaaaaattgcagaactaattcatttccttttttaagcatggatcctgtaaaat |
45751953 |
T |
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| Q |
216 |
cactgcattatgcatatttctgtcataccatattaaacactttctattgctccataaatccggcttacatattcatctagaatcatatattaataggcgg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
45751952 |
cactgcattatgcatatttctgtcataccatattaaacactttctattgctccataaatccggcttacatattattctagaatcatatattattaggcgg |
45751853 |
T |
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| Q |
316 |
tgacagttatctttgggaatcgctgtgtggataagttgctaagtaatagttattcatgtaaatgacatgtgttttgtgagtgacatgacattttttaaat |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45751852 |
tgacagttatctttgggaaacgctgtgtggataagttgctaagtaatagttattcatgtaaatgacatgtgttttgtgagtgacatgacattttttaaat |
45751753 |
T |
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| Q |
416 |
tttgtgttgttt |
427 |
Q |
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| T |
45751752 |
tttgtgttgttt |
45751741 |
T |
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