View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_high_7 (Length: 379)
Name: NF15206_high_7
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 18600836 - 18601221
Alignment:
| Q |
8 |
agcaaaggatataagaacagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttggt |
107 |
Q |
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| T |
18600836 |
agcaaaggatataagaagagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttggt |
18600935 |
T |
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| Q |
108 |
gatgtttttgtgtcactagtgttattgggttggctcagaagaggagttggatcacccatatcaagagtctatgtagtttttctatagaattcttgtcgta |
207 |
Q |
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| T |
18600936 |
gatgtttttgtgtcactggtgttattgggttggctcagaagaggagttggatcacccatatcaagagtc--tgtagtttttctatagaattcttgttgta |
18601033 |
T |
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| Q |
208 |
atgactacctattctatac--------------tatatatggggaatatgcatgcatagctaactatagaataatctagatattctta----gtagtatt |
289 |
Q |
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| T |
18601034 |
atgactacctattctatactatatatatatatatatatatggggaatatgcatgcataact-actatagtatcatctagatattcttagtacgtagtaat |
18601132 |
T |
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| Q |
290 |
tgaattttataattatttttcataaaataacacactcatgtctactacttttttctaaataaagtcactcatgtccactatgcatattat |
379 |
Q |
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| T |
18601133 |
tgaattttataattatttttcataaaataacaccctcatgtccact-ttattttctaaaaaaagaccctcatgtccactatgcatattat |
18601221 |
T |
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