View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_1 (Length: 689)
Name: NF15206_low_1
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 670
Target Start/End: Complemental strand, 42798684 - 42798015
Alignment:
| Q |
1 |
atcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798684 |
atcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatat |
42798585 |
T |
|
| Q |
101 |
gaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798584 |
gaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagt |
42798485 |
T |
|
| Q |
201 |
caactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798484 |
caactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttg |
42798385 |
T |
|
| Q |
301 |
gtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaaagaagatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42798384 |
gtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaaagaagatg |
42798285 |
T |
|
| Q |
401 |
taaggaaagaatagtggcaagctagtatttgacaaattttattactattcat---ggnnnnnnnnnaaatggttatggccattttgatatattctttgtt |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
42798284 |
taaggaaagaatagtggcaagctagtatttgacaaattttattactattcattagtttttttttttaaatggttatgaccattttgatatattctttgtt |
42798185 |
T |
|
| Q |
498 |
taatttgttaatatccgaaaatatgtaagaaaagattcacccgaagtgtatgagtctatgttcttgtttgcttgctttaattaagcaagtttcttggaaa |
597 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |
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| T |
42798184 |
taatttgttaatatccgaaaatatgtaacaaaagattcacccgaagtgtatgagtctaagctcttgtttgcttgctttaattaagcaagttccttggaaa |
42798085 |
T |
|
| Q |
598 |
ctccttctgtatcattgttaatttgttaattaaagtgaaattaagtcggttaattctttgaattctatatacc |
670 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
42798084 |
ctc---ctgtatcattgttaatttgttaattaaagtgaaattaagtcggttagttctttgaattctatgtacc |
42798015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 42789146 - 42788567
Alignment:
| Q |
1 |
atcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42789146 |
atcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatat |
42789047 |
T |
|
| Q |
101 |
gaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789046 |
gaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagt |
42788947 |
T |
|
| Q |
201 |
caactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788946 |
caactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttg |
42788847 |
T |
|
| Q |
301 |
gtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaaagaagatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42788846 |
gtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaaagaagatg |
42788747 |
T |
|
| Q |
401 |
taaggaaagaatagtggcaagctagtatttgacaaattttattactattcatgg--nnnnnnnnnaaatggttatggccattttgatatattctttgttt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
42788746 |
taaggaaagaatagtggcaagctagtatttgacaaattttattactattcatagtttttttttttaaatggttatgaccattttgatatattctttgttt |
42788647 |
T |
|
| Q |
499 |
aatttgttaatatccgaaaatatgtaagaaaagattcacccgaagtgtatgagtctatgttcttgtttgcttgctttaat |
578 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
42788646 |
aatttgttaatatccgaaaatatgtaacaaaagattcacccgaagtgtatgagtctaagctcttgtttgcttgctttaat |
42788567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 74 - 373
Target Start/End: Complemental strand, 34566746 - 34566447
Alignment:
| Q |
74 |
aatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttgga |
173 |
Q |
| |
|
||||| |||||||| | ||| |||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| ||||||||||||| |
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| T |
34566746 |
aatagagaaagattaaggaaaagatatgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttgga |
34566647 |
T |
|
| Q |
174 |
tgaatttgagtccacttttgaaggagtca-actaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggt |
272 |
Q |
| |
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||||| |||||||| | ||| | ||| | || | |||||||||||| | ||||||||| ||||||||||| | || | ||||| || || |||| |
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|
| T |
34566646 |
tgaatatgagtccaatgttgga-aagtaatacaagagaaggtgaattgaagctttggaatgagattttgaatgaagttaagcttaatatttcaccagggt |
34566548 |
T |
|
| Q |
273 |
gttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcat |
372 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| || || ||||| |||||||||||| | || | ||| ||||| | |||||||||||| | ||||| |
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|
| T |
34566547 |
gttcttgtcattgttccgaacccggttggtttagggtttgttttgcaaatatgagtgaagaaacacttgaacttgcactcaaaagaatacgtgatttcat |
34566448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 47828714 - 47828785
Alignment:
| Q |
254 |
ttgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
325 |
Q |
| |
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|||||||||||||| || | ||||||||||||| | ||||||| |||||||| | ||||||||||||||| |
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|
| T |
47828714 |
ttgaatatatctcctggatcttcttgtcattgttctgaacctgggtggtttaggatttgctttgctaatatg |
47828785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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