View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15206_low_10 (Length: 355)

Name: NF15206_low_10
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15206_low_10
NF15206_low_10
[»] chr4 (10 HSPs)
chr4 (1-342)||(27559327-27559658)
chr4 (1-214)||(27556466-27556687)
chr4 (1-97)||(27446104-27446200)
chr4 (30-72)||(27422051-27422093)
chr4 (39-72)||(27411581-27411614)
chr4 (39-72)||(27419196-27419229)
chr4 (39-72)||(27424639-27424672)
chr4 (233-270)||(27438599-27438636)
chr4 (39-72)||(27567237-27567270)
chr4 (39-72)||(27571605-27571638)
[»] chr3 (1 HSPs)
chr3 (1-72)||(50913478-50913549)
[»] chr2 (1 HSPs)
chr2 (285-342)||(10397445-10397498)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 27559327 - 27559658
Alignment:
Q  1 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgggattgcatccacagtcttggaagatgacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27559327 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgggattccatccacagtcttggaagatgacct 27559426  T
Q  101 tctaatatcaggtaaccggaatcccatattgttagttattatgagttgtacacacaaacaatgcaataacttgtgtataaaagagagaaatatttgaatt 200  Q
    ||||||| |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27559427 tctaataccaggtaaccggaatcccatattgttagtt----------gtacacacaaacaatgcaataacttgtgtataaaagagagaaatatttgaatt 27559516  T
Q  201 tgtatgttgtgagttgcttgttttggtgatttagaatgtaatgatgagtatatatagatagataaaggagtctctgccaactaatgaattgtgtggttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27559517 tgtatgttgtgagttgcttgttttggtgatttagaatgtaatgatgagtatatatagatagataaaggagtctctgccaactaatgaattgtgtggttgt 27559616  T
Q  301 gttagttttgggctattatttgataagagataagggccaatg 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27559617 gttagttttgggctattatttgataagagataagggccaatg 27559658  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27556466 - 27556687
Alignment:
Q  1 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgggattgcatccacagtcttggaa---gatga 97  Q
    ||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||   |||||    
T  27556466 tcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttcatccacagccttggaagaggatga 27556565  T
Q  98 ccttctaatatcaggtaaccggaatcccatattgttagttattatgagttg-tacacacaaacaatg----caataacttgtgtataaaagagagaaata 192  Q
    |||||||||| |||||||  | || |||||||||||| |||||||||||||  |||||| |||||||    ||| | ||| ||||| ||||| |||||||    
T  27556566 ccttctaataccaggtaagtgaaaacccatattgttaattattatgagttgcaacacactaacaatgaatacaacagcttttgtatgaaagaaagaaata 27556665  T
Q  193 tttgaatttgtatgttgtgagt 214  Q
    ||||||||||||| ||||||||    
T  27556666 tttgaatttgtattttgtgagt 27556687  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27446200 - 27446104
Alignment:
Q  1 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgggattgcatccacagtcttggaagatga 97  Q
    ||||||||||| | ||||||| ||||| ||||||||| |||||||||||||| || |||||||||||||||| | ||||||||| ||||||||||||    
T  27446200 tcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgggacttcatccacagccttggaagatga 27446104  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 27422051 - 27422093
Alignment:
Q  30 ttcattttgtctccaacataaactgcgagatagccttttggga 72  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  27422051 ttcattctatctccaacatagactgcgagatagccttttggga 27422093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 27411581 - 27411614
Alignment:
Q  39 tctccaacataaactgcgagatagccttttggga 72  Q
    ||||||||||| ||||||||||||||||||||||    
T  27411581 tctccaacatagactgcgagatagccttttggga 27411614  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 27419196 - 27419229
Alignment:
Q  39 tctccaacataaactgcgagatagccttttggga 72  Q
    ||||||||||| ||||||||||||||||||||||    
T  27419196 tctccaacatagactgcgagatagccttttggga 27419229  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 27424639 - 27424672
Alignment:
Q  39 tctccaacataaactgcgagatagccttttggga 72  Q
    ||||||||||| ||||||||||||||||||||||    
T  27424639 tctccaacatagactgcgagatagccttttggga 27424672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 27438636 - 27438599
Alignment:
Q  233 agaatgtaatgatgagtatatatagatagataaaggag 270  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27438636 agaatgtaatgatgagtatatatagaaagatataggag 27438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 27567270 - 27567237
Alignment:
Q  39 tctccaacataaactgcgagatagccttttggga 72  Q
    ||||||||||| ||||||||||||||||||||||    
T  27567270 tctccaacatagactgcgagatagccttttggga 27567237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 27571638 - 27571605
Alignment:
Q  39 tctccaacataaactgcgagatagccttttggga 72  Q
    ||||||||||| ||||||||||||||||||||||    
T  27571638 tctccaacatagactgcgagatagccttttggga 27571605  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50913549 - 50913478
Alignment:
Q  1 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttggga 72  Q
    |||| ||||| || |||||||  || ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  50913549 tcaagaatgatattggaatcaagaacctcttcattttctctccaacatacactgcaagatagccttttggga 50913478  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 10397498 - 10397445
Alignment:
Q  285 tgaattgtgtggttgtgttagttttgggctattatttgataagagataagggccaatg 342  Q
    |||||||||||||||||||  |    ||||||||||||||||||||||||||||||||    
T  10397498 tgaattgtgtggttgtgttgct----ggctattatttgataagagataagggccaatg 10397445  T

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