View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15206_low_11 (Length: 349)

Name: NF15206_low_11
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15206_low_11
NF15206_low_11
[»] chr1 (20 HSPs)
chr1 (109-230)||(31879821-31879942)
chr1 (259-330)||(31880202-31880273)
chr1 (13-50)||(31879728-31879765)
chr1 (292-329)||(13501078-13501115)
chr1 (290-330)||(44734110-44734150)
chr1 (295-330)||(1607947-1607982)
chr1 (299-330)||(46947495-46947526)
chr1 (289-330)||(7237109-7237150)
chr1 (297-330)||(9472067-9472100)
chr1 (297-330)||(21249357-21249390)
chr1 (301-330)||(22088084-22088113)
chr1 (297-330)||(33170354-33170387)
chr1 (297-330)||(45143563-45143596)
chr1 (293-330)||(47843871-47843908)
chr1 (294-330)||(17935188-17935224)
chr1 (294-330)||(28868003-28868039)
chr1 (290-330)||(35373668-35373708)
chr1 (301-329)||(35531179-35531207)
chr1 (290-330)||(41411438-41411478)
chr1 (301-329)||(48410536-48410564)
[»] chr8 (16 HSPs)
chr8 (292-330)||(42309905-42309943)
chr8 (292-330)||(2828490-2828528)
chr8 (296-330)||(10672971-10673005)
chr8 (301-330)||(1173187-1173216)
chr8 (297-330)||(8841732-8841765)
chr8 (297-330)||(9921733-9921766)
chr8 (301-330)||(21134819-21134848)
chr8 (297-330)||(34414966-34414999)
chr8 (296-329)||(38706311-38706344)
chr8 (289-330)||(40713885-40713926)
chr8 (297-330)||(42640914-42640947)
chr8 (301-330)||(45509628-45509657)
chr8 (294-330)||(9375732-9375768)
chr8 (290-330)||(41724645-41724685)
chr8 (301-329)||(41866021-41866049)
chr8 (290-330)||(45434485-45434525)
[»] chr2 (13 HSPs)
chr2 (290-330)||(39545311-39545351)
chr2 (293-333)||(30784561-30784601)
chr2 (291-330)||(6532036-6532075)
chr2 (297-330)||(2630335-2630368)
chr2 (297-330)||(2721633-2721666)
chr2 (297-330)||(6732182-6732215)
chr2 (297-330)||(7687004-7687037)
chr2 (301-330)||(39007607-39007636)
chr2 (298-330)||(1721732-1721764)
chr2 (294-330)||(17419921-17419957)
chr2 (294-330)||(17420387-17420423)
chr2 (290-330)||(26648742-26648782)
chr2 (294-330)||(27252004-27252040)
[»] chr4 (19 HSPs)
chr4 (289-330)||(480229-480270)
chr4 (292-330)||(38992069-38992107)
chr4 (297-330)||(11492534-11492567)
chr4 (301-330)||(29384581-29384610)
chr4 (297-330)||(33440004-33440037)
chr4 (297-330)||(39270733-39270766)
chr4 (297-330)||(39910600-39910633)
chr4 (297-330)||(42058939-42058972)
chr4 (297-330)||(42511687-42511720)
chr4 (296-329)||(52948146-52948179)
chr4 (290-330)||(8080063-8080103)
chr4 (298-330)||(14488711-14488743)
chr4 (297-329)||(19522589-19522621)
chr4 (294-330)||(27553009-27553045)
chr4 (298-330)||(28197746-28197778)
chr4 (298-330)||(33975331-33975363)
chr4 (298-330)||(39261883-39261915)
chr4 (297-329)||(42972659-42972691)
chr4 (298-330)||(56319617-56319649)
[»] chr3 (19 HSPs)
chr3 (294-330)||(1631310-1631346)
chr3 (295-330)||(51949421-51949456)
chr3 (296-330)||(28588912-28588946)
chr3 (291-329)||(41695579-41695617)
chr3 (296-330)||(41749283-41749317)
chr3 (297-330)||(9693509-9693542)
chr3 (297-330)||(16146643-16146676)
chr3 (297-330)||(25656833-25656866)
chr3 (301-330)||(26324669-26324698)
chr3 (297-330)||(27843064-27843097)
chr3 (297-330)||(31401244-31401277)
chr3 (293-330)||(40550527-40550564)
chr3 (297-330)||(45474928-45474961)
chr3 (291-331)||(14525178-14525218)
chr3 (298-330)||(20915875-20915907)
chr3 (298-330)||(20924837-20924869)
chr3 (298-330)||(30640452-30640484)
chr3 (298-330)||(43974003-43974035)
chr3 (297-329)||(44809222-44809254)
[»] chr7 (11 HSPs)
chr7 (295-330)||(23595380-23595415)
chr7 (296-330)||(18773681-18773715)
chr7 (277-330)||(30164077-30164131)
chr7 (293-330)||(15648499-15648536)
chr7 (297-330)||(19919267-19919300)
chr7 (301-330)||(27585849-27585878)
chr7 (292-325)||(41298234-41298267)
chr7 (297-330)||(42913236-42913269)
chr7 (289-329)||(15654470-15654510)
chr7 (291-330)||(48154019-48154059)
chr7 (294-330)||(48154500-48154536)
[»] chr6 (10 HSPs)
chr6 (295-330)||(32541898-32541933)
chr6 (297-330)||(8440092-8440125)
chr6 (297-330)||(8677611-8677644)
chr6 (297-330)||(14191011-14191044)
chr6 (301-330)||(28663186-28663215)
chr6 (296-329)||(30660656-30660689)
chr6 (297-330)||(32400468-32400501)
chr6 (298-330)||(4605560-4605592)
chr6 (298-330)||(7576103-7576135)
chr6 (301-329)||(30493101-30493129)
[»] chr5 (14 HSPs)
chr5 (296-330)||(32400479-32400513)
chr5 (301-330)||(2394096-2394125)
chr5 (297-330)||(3850762-3850795)
chr5 (301-330)||(32064942-32064971)
chr5 (301-330)||(37250288-37250317)
chr5 (297-329)||(4462452-4462484)
chr5 (297-329)||(8313600-8313632)
chr5 (297-329)||(10674520-10674552)
chr5 (290-330)||(23098350-23098390)
chr5 (298-330)||(31199780-31199812)
chr5 (301-329)||(32538753-32538781)
chr5 (294-330)||(34704096-34704132)
chr5 (294-330)||(39413240-39413276)
chr5 (297-329)||(42877994-42878026)
[»] scaffold0022 (1 HSPs)
scaffold0022 (297-330)||(138368-138401)
[»] scaffold0571 (1 HSPs)
scaffold0571 (301-329)||(8843-8871)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 31879821 - 31879942
Alignment:
Q  109 gtaattgatgaatcaaaataatttactgatccaattaacaatttattaaaaattctttaagaaattcaattcatccattcaacgcataaatcacctatga 208  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31879821 gtaattgatgaatcaaaataatttagtgatccaaataacaatttattgaaaattctttaagaaattcaattcatccattcaacccataaatcacctatga 31879920  T
Q  209 tcatccattatcatattttcaa 230  Q
    | ||||||||||||||||||||    
T  31879921 taatccattatcatattttcaa 31879942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 31880202 - 31880273
Alignment:
Q  259 tggatattcatccaatctatctataaaagaatattaaattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  31880202 tggatattcatccgatctatctataaaagaatattaaattttgggttaaatatgtttttggtccttataaat 31880273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 31879728 - 31879765
Alignment:
Q  13 aatatctatttagagctgaaacagtagggggcaacttt 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31879728 aatatctatttagagctgaaacagtagggggcaacttt 31879765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 13501078 - 13501115
Alignment:
Q  292 ttaaattttggattaaatatgtttttggtccctataaa 329  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13501078 ttaaattttgggttaaatatgtttttggtccctataaa 13501115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 44734150 - 44734110
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  44734150 tattaaatttagggttaaatatgtttttggtccctataaat 44734110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 1607982 - 1607947
Alignment:
Q  295 aattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1607982 aattttggattaaatatgtttttggtcactataaat 1607947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 46947495 - 46947526
Alignment:
Q  299 ttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||||    
T  46947495 ttggattaaatatgtttttggtccctataaat 46947526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 7237150 - 7237109
Alignment:
Q  289 atattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| ||||| |||||||| ||||||||||||||||||    
T  7237150 atattaaaatttgggttaaatatatttttggtccctataaat 7237109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 9472067 - 9472100
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  9472067 ttttgggttaaatatgtttttggtccctataaat 9472100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 21249390 - 21249357
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  21249390 ttttgggttaaatatgtttttggtccctataaat 21249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 22088113 - 22088084
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  22088113 ggattaaatatgtttttggtccctataaat 22088084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 33170387 - 33170354
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||||||||||||||||| |||||||||    
T  33170387 ttttggattaaatatgtttttggttcctataaat 33170354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 45143563 - 45143596
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  45143563 ttttgggttaaatatgtttttggtccctataaat 45143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 47843871 - 47843908
Alignment:
Q  293 taaattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| || |||||||||||||||||||||||||||    
T  47843871 taaatttagggttaaatatgtttttggtccctataaat 47843908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 17935224 - 17935188
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  17935224 aaatttagggttaaatatgtttttggtccctataaat 17935188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 28868003 - 28868039
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  28868003 aaatttagggttaaatatgtttttggtccctataaat 28868039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 35373668 - 35373708
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||| ||| |||||||||||||||||| ||||||||    
T  35373668 tattaaattatgggttaaatatgtttttggtctctataaat 35373708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 35531207 - 35531179
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  35531207 ggattaaatatgtttttggtccctataaa 35531179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 41411438 - 41411478
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| ||| || |||||||||||||||||||||||||||    
T  41411438 tattaattttagggttaaatatgtttttggtccctataaat 41411478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 48410564 - 48410536
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  48410564 ggattaaatatgtttttggtccctataaa 48410536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 42309943 - 42309905
Alignment:
Q  292 ttaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42309943 ttaaattttggattaaatatgtttttggtccctataaat 42309905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 2828490 - 2828528
Alignment:
Q  292 ttaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| || |||||||||||||||||||||||||||    
T  2828490 ttaaatttagggttaaatatgtttttggtccctataaat 2828528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 10672971 - 10673005
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| |||||||||||||||||||||||||||    
T  10672971 attttgggttaaatatgtttttggtccctataaat 10673005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 1173216 - 1173187
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  1173216 ggattaaatatgtttttggtccctataaat 1173187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 8841732 - 8841765
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  8841732 ttttgggttaaatatgtttttggtccctataaat 8841765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 9921733 - 9921766
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||| ||||||||||||||||||    
T  9921733 ttttggattaaatatatttttggtccctataaat 9921766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 21134848 - 21134819
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  21134848 ggattaaatatgtttttggtccctataaat 21134819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 34414999 - 34414966
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  34414999 ttttgggttaaatatgtttttggtccctataaat 34414966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 38706311 - 38706344
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaa 329  Q
    ||||||| ||||||||||||||||||||||||||    
T  38706311 attttgggttaaatatgtttttggtccctataaa 38706344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 40713885 - 40713926
Alignment:
Q  289 atattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  40713885 atataaaatttagggttaaatatgtttttggtccctataaat 40713926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 42640914 - 42640947
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  42640914 ttttgggttaaatatgtttttggtccctataaat 42640947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 45509628 - 45509657
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  45509628 ggattaaatatgtttttggtccctataaat 45509657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 9375732 - 9375768
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  9375732 aaatttagggttaaatatgtttttggtccctataaat 9375768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 41724645 - 41724685
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  41724645 tattgaattttggattaattaagtttttggtccctataaat 41724685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 41866049 - 41866021
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  41866049 ggattaaatatgtttttggtccctataaa 41866021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 45434485 - 45434525
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||| || ||||||||||||||||||| |||||||    
T  45434485 tattaaatttagggttaaatatgtttttggtccttataaat 45434525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 39545311 - 39545351
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  39545311 tattaaattttgggttaaatatgtttttggtccctataaat 39545351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 30784601 - 30784561
Alignment:
Q  293 taaattttggattaaatatgtttttggtccctataaattga 333  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  30784601 taaatttagggttaaatatgtttttggtccctataaattga 30784561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 6532036 - 6532075
Alignment:
Q  291 attaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  6532036 attaaattttgggttaaatatgtttttggtccttataaat 6532075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 2630368 - 2630335
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  2630368 ttttgggttaaatatgtttttggtccctataaat 2630335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 2721666 - 2721633
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  2721666 ttttgggttaaatatgtttttggtccctataaat 2721633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 6732215 - 6732182
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  6732215 ttttgggttaaatatgtttttggtccctataaat 6732182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 7687037 - 7687004
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  7687037 ttttgggttaaatatgtttttggtccctataaat 7687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 39007607 - 39007636
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  39007607 ggattaaatatgtttttggtccctataaat 39007636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 1721732 - 1721764
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  1721732 tttgggttaaatatgtttttggtccctataaat 1721764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 17419921 - 17419957
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  17419921 aaattttggattaaataggtttttagtccctataaat 17419957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 17420423 - 17420387
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  17420423 aaatttagggttaaatatgtttttggtccctataaat 17420387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 26648782 - 26648742
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| | || |||||||||||||||||||||||||||    
T  26648782 tattaaatatagggttaaatatgtttttggtccctataaat 26648742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 27252040 - 27252004
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  27252040 aaatttagggttaaatatgtttttggtccctataaat 27252004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 480270 - 480229
Alignment:
Q  289 atattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  480270 atataaaattttgggttaaatatgtttttggtccctataaat 480229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 38992069 - 38992107
Alignment:
Q  292 ttaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| || |||||||||||||||||||||||||||    
T  38992069 ttaaatttagggttaaatatgtttttggtccctataaat 38992107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 11492534 - 11492567
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||| ||||||||||||    
T  11492534 ttttggattaaatatgtttttagtccctataaat 11492567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 29384581 - 29384610
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  29384581 ggattaaatatgtttttggtccctataaat 29384610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 33440037 - 33440004
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  33440037 ttttgggttaaatatgtttttggtccctataaat 33440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 39270766 - 39270733
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||||| |||||||||||||||||||||    
T  39270766 ttttggattaaaaatgtttttggtccctataaat 39270733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 39910600 - 39910633
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  39910600 ttttgggttaaatatgtttttggtccctataaat 39910633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 42058939 - 42058972
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||| ||||||||||||    
T  42058939 ttttggattaaatatgttttttgtccctataaat 42058972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 42511687 - 42511720
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  42511687 ttttgggttaaatatgtttttggtccctataaat 42511720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 52948179 - 52948146
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaa 329  Q
    ||||||| ||||||||||||||||||||||||||    
T  52948179 attttgggttaaatatgtttttggtccctataaa 52948146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 8080063 - 8080103
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| ||| || |||||||||||||||||||||||||||    
T  8080063 tattaattttagggttaaatatgtttttggtccctataaat 8080103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 14488743 - 14488711
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||| |||||||||||||||||    
T  14488743 tttggattaaatatgattttggtccctataaat 14488711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 19522589 - 19522621
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  19522589 ttttgggttaaatatgtttttggtccctataaa 19522621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 27553009 - 27553045
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  27553009 aaatttagggttaaatatgtttttggtccctataaat 27553045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 28197746 - 28197778
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  28197746 tttgggttaaatatgtttttggtccctataaat 28197778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 33975363 - 33975331
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  33975363 tttgggttaaatatgtttttggtccctataaat 33975331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 39261915 - 39261883
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  39261915 tttgggttaaatatgtttttggtccctataaat 39261883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 42972659 - 42972691
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    ||||| |||||||||||||||||||||||||||    
T  42972659 ttttgtattaaatatgtttttggtccctataaa 42972691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 56319649 - 56319617
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  56319649 tttgggttaaatatgtttttggtccctataaat 56319617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 1631346 - 1631310
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1631346 aaatttaggattaaatatgtttttggtccctataaat 1631310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 51949421 - 51949456
Alignment:
Q  295 aattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| |||||||||||||||||||||||||||    
T  51949421 aattttgggttaaatatgtttttggtccctataaat 51949456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 28588946 - 28588912
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| |||||||||||||||||||||||||||    
T  28588946 attttgggttaaatatgtttttggtccctataaat 28588912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 41695617 - 41695579
Alignment:
Q  291 attaaattttggattaaatatgtttttggtccctataaa 329  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  41695617 attaaattttagattaaatatgtttttagtccctataaa 41695579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 41749317 - 41749283
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| |||||||||||||||||||||||||||    
T  41749317 attttgggttaaatatgtttttggtccctataaat 41749283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 9693542 - 9693509
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  9693542 ttttgggttaaatatgtttttggtccctataaat 9693509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 16146643 - 16146676
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  16146643 ttttgggttaaatatgtttttggtccctataaat 16146676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 25656866 - 25656833
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  25656866 ttttgggttaaatatgtttttggtccctataaat 25656833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 26324698 - 26324669
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  26324698 ggattaaatatgtttttggtccctataaat 26324669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 27843097 - 27843064
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||| ||||||||||||    
T  27843097 ttttggattaaatatgtttttcgtccctataaat 27843064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 31401244 - 31401277
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  31401244 ttttgggttaaatatgtttttggtccctataaat 31401277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 40550564 - 40550527
Alignment:
Q  293 taaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  40550564 taaaatttgggttaaatatgtttttggtccctataaat 40550527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 45474961 - 45474928
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||||||||| |||||||||||||||||    
T  45474961 ttttggattaaatatgcttttggtccctataaat 45474928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 14525218 - 14525178
Alignment:
Q  291 attaaattttggattaaatatgtttttggtccctataaatt 331  Q
    ||||| |||||| |||||||||||||| |||||||||||||    
T  14525218 attaatttttgggttaaatatgtttttcgtccctataaatt 14525178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 20915907 - 20915875
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  20915907 tttgggttaaatatgtttttggtccctataaat 20915875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 20924869 - 20924837
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  20924869 tttgggttaaatatgtttttggtccctataaat 20924837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 30640452 - 30640484
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  30640452 tttgggttaaatatgtttttggtccctataaat 30640484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 43974003 - 43974035
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||| |||||||    
T  43974003 tttggattaaatatgtttttggtccttataaat 43974035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 44809254 - 44809222
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  44809254 ttttgggttaaatatgtttttggtccctataaa 44809222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 23595415 - 23595380
Alignment:
Q  295 aattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| |||||||||||||||||||||||||||    
T  23595415 aattttgggttaaatatgtttttggtccctataaat 23595380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 18773715 - 18773681
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| |||||||||||||||||||||||||||    
T  18773715 attttgggttaaatatgtttttggtccctataaat 18773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 30164131 - 30164077
Alignment:
Q  277 atctataaaagaatattaaat-tttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| || |||||||||| ||||| |||||||| ||||||||||||||||||    
T  30164131 atctatataacaatattaaatctttgggttaaatatatttttggtccctataaat 30164077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 15648536 - 15648499
Alignment:
Q  293 taaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  15648536 taaattttgggttaaatatgtttttggtccctacaaat 15648499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 19919267 - 19919300
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  19919267 ttttgggttaaatatgtttttggtccctataaat 19919300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 27585849 - 27585878
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  27585849 ggattaaatatgtttttggtccctataaat 27585878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 41298234 - 41298267
Alignment:
Q  292 ttaaattttggattaaatatgtttttggtcccta 325  Q
    ||||||||||| ||||||||||||||||||||||    
T  41298234 ttaaattttgggttaaatatgtttttggtcccta 41298267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 42913236 - 42913269
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  42913236 ttttgggttaaatatgtttttggtccctataaat 42913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 15654510 - 15654470
Alignment:
Q  289 atattaaattttggattaaatatgtttttggtccctataaa 329  Q
    |||||||| || |||||||||||||||||||||| ||||||    
T  15654510 atattaaaattaggattaaatatgtttttggtccttataaa 15654470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 48154019 - 48154059
Alignment:
Q  291 attaaatttt-ggattaaatatgtttttggtccctataaat 330  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  48154019 attaaattttagggttaaatatgtttttggtccctataaat 48154059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 48154536 - 48154500
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| || |||||||||||||||||||||||||||    
T  48154536 aaatttagggttaaatatgtttttggtccctataaat 48154500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 32541898 - 32541933
Alignment:
Q  295 aattttggattaaatatgtttttggtccctataaat 330  Q
    |||||||| |||||||||||||||||||||||||||    
T  32541898 aattttgggttaaatatgtttttggtccctataaat 32541933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 8440092 - 8440125
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  8440092 ttttgggttaaatatgtttttggtccctataaat 8440125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 8677611 - 8677644
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  8677611 ttttgggttaaatatgtttttggtccctataaat 8677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 14191044 - 14191011
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  14191044 ttttgggttaaatatgtttttggtccctataaat 14191011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 28663215 - 28663186
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  28663215 ggattaaatatgtttttggtccctataaat 28663186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 30660656 - 30660689
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaa 329  Q
    |||| |||||||||||||||||||||||||||||    
T  30660656 atttaggattaaatatgtttttggtccctataaa 30660689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 32400468 - 32400501
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  32400468 ttttgggttaaatatgtttttggtccctataaat 32400501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 4605560 - 4605592
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  4605560 tttgggttaaatatgtttttggtccctataaat 4605592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 7576135 - 7576103
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  7576135 tttgggttaaatatgtttttggtccctataaat 7576103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 30493129 - 30493101
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  30493129 ggattaaatatgtttttggtccctataaa 30493101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 32400479 - 32400513
Alignment:
Q  296 attttggattaaatatgtttttggtccctataaat 330  Q
    ||||||| |||||||||||||||||||||||||||    
T  32400479 attttgggttaaatatgtttttggtccctataaat 32400513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 2394125 - 2394096
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  2394125 ggattaaatatgtttttggtccctataaat 2394096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 3850762 - 3850795
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  3850762 ttttgggttaaatatgtttttggtccctataaat 3850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 32064942 - 32064971
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  32064942 ggattaaatatgtttttggtccctataaat 32064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 37250317 - 37250288
Alignment:
Q  301 ggattaaatatgtttttggtccctataaat 330  Q
    ||||||||||||||||||||||||||||||    
T  37250317 ggattaaatatgtttttggtccctataaat 37250288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 4462452 - 4462484
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  4462452 ttttgggttaaatatgtttttggtccctataaa 4462484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 8313632 - 8313600
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  8313632 ttttgggttaaatatgtttttggtccctataaa 8313600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 10674520 - 10674552
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  10674520 ttttgggttaaatatgtttttggtccctataaa 10674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 23098390 - 23098350
Alignment:
Q  290 tattaaattttggattaaatatgtttttggtccctataaat 330  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  23098390 tattaattattgggttaaatatgtttttggtccctataaat 23098350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 31199780 - 31199812
Alignment:
Q  298 tttggattaaatatgtttttggtccctataaat 330  Q
    ||||| |||||||||||||||||||||||||||    
T  31199780 tttgggttaaatatgtttttggtccctataaat 31199812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 32538781 - 32538753
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  32538781 ggattaaatatgtttttggtccctataaa 32538753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 34704132 - 34704096
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| |||| |||||||||||||||||||||||||||    
T  34704132 aaatgttgggttaaatatgtttttggtccctataaat 34704096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 39413276 - 39413240
Alignment:
Q  294 aaattttggattaaatatgtttttggtccctataaat 330  Q
    |||| |||| |||||||||||||||||||||||||||    
T  39413276 aaatattgggttaaatatgtttttggtccctataaat 39413240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 42878026 - 42877994
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaa 329  Q
    |||||| ||||||||||||||||||||||||||    
T  42878026 ttttgggttaaatatgtttttggtccctataaa 42877994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 138368 - 138401
Alignment:
Q  297 ttttggattaaatatgtttttggtccctataaat 330  Q
    |||||| |||||||||||||||||||||||||||    
T  138368 ttttgggttaaatatgtttttggtccctataaat 138401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 8871 - 8843
Alignment:
Q  301 ggattaaatatgtttttggtccctataaa 329  Q
    |||||||||||||||||||||||||||||    
T  8871 ggattaaatatgtttttggtccctataaa 8843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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