View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_15 (Length: 258)
Name: NF15206_low_15
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 27777239 - 27777480
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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| T |
27777239 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacg |
27777338 |
T |
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| Q |
101 |
acaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaa |
200 |
Q |
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| T |
27777339 |
gcaggtactaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaa |
27777438 |
T |
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| Q |
201 |
gattgcaaggaacctgctgcctctaatcaaagtattgaagag |
242 |
Q |
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| T |
27777439 |
gattgaaaggaacctactgcctctaatcaaagtattgaagag |
27777480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27782722 - 27782485
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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| T |
27782722 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacg |
27782623 |
T |
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| Q |
101 |
acaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaa |
200 |
Q |
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| T |
27782622 |
gcaggttctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaa |
27782523 |
T |
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| Q |
201 |
gattgcaaggaacctgctgcctctaatcaaagtattga |
238 |
Q |
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| T |
27782522 |
gattgtaaggaaccttctgcctctaatcaaagtattga |
27782485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27780653 - 27780762
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
27780653 |
acaaagctttgaatggacatatgatatgtcactcgccaactgctgcaccatcttcctttgcacagagctatgatgatcagtttctaccacccaagaaacg |
27780752 |
T |
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| Q |
101 |
acaggtgcta |
110 |
Q |
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|||| |||| |
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| T |
27780753 |
gcaggcgcta |
27780762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 27780947 - 27780997
Alignment:
| Q |
192 |
acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagag |
242 |
Q |
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| T |
27780947 |
acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagag |
27780997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38227604 - 38227572
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcact |
33 |
Q |
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| T |
38227604 |
acaaagcattgaatggacatatgagatgtcact |
38227572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 441055 - 441009
Alignment:
| Q |
196 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagag |
242 |
Q |
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| T |
441055 |
cacaagattgcaaggaacctcctacctctaatcatggtattgaagag |
441009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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