View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_16 (Length: 254)
Name: NF15206_low_16
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 6450448 - 6450237
Alignment:
| Q |
27 |
gagaaggatcacactccaaagtctcaagccaacatgtcttaccatcttattagccgcactctctcttgaacccctt-attgacttgggcgtcagagcacg |
125 |
Q |
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| T |
6450448 |
gagaaggatcacactccaaagtctcaagccaacatgtcttaccatcttattagccacactctctcttgaacccctttattgacttgggcgtcagagcacg |
6450349 |
T |
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| Q |
126 |
tctaggtacaccacccccttccgttggagaatggcttaaggtagctcgtggtggactacaaaagctaaatattatacatcatatcttgacctcgccaaac |
225 |
Q |
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| T |
6450348 |
tctaggtacaccacccccttccattggagaatggcttaaggtagctcgtggtggactacaaaagctaaatattatacatcatatcttgacctagccaaac |
6450249 |
T |
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| Q |
226 |
atcatcttaagt |
237 |
Q |
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|||||||||||| |
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| T |
6450248 |
atcatcttaagt |
6450237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 6451260 - 6451184
Alignment:
| Q |
65 |
ttaccatcttattagccgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccc |
141 |
Q |
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| T |
6451260 |
ttaccatcttattatccacactctctattgaaccccatactaactagggcgtcaaagcacgtgcaagtacaccaccc |
6451184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 23268464 - 23268525
Alignment:
| Q |
83 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccccct |
144 |
Q |
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| T |
23268464 |
cactctctcttgaaccccttactgacttgggcgtcggagcacgtgcaggtacacaaccccct |
23268525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 12176390 - 12176454
Alignment:
| Q |
81 |
cgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccccctt |
145 |
Q |
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| T |
12176390 |
cgcactctctctcgaaccctttattgacttagacatcagagcacgtgcaggtgcaccaccccctt |
12176454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 23041109 - 23041192
Alignment:
| Q |
58 |
acatgtcttaccatcttattagccgcactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccaccc |
141 |
Q |
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| T |
23041109 |
acatttcttaccttatttttagccacgctccctcttgaacctcttactaacttcggcgttagagcacgtgtaggtacaccaccc |
23041192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 17355436 - 17355385
Alignment:
| Q |
63 |
tcttaccatcttattagccgcactctctcttgaaccccttattgacttgggc |
114 |
Q |
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| T |
17355436 |
tcttaccctatttttagccgcactctctcttaaaccccttattgacttgggc |
17355385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 51239444 - 51239399
Alignment:
| Q |
77 |
tagccgcactctctcttgaaccccttattgacttgggcgtcagagc |
122 |
Q |
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| T |
51239444 |
tagccgcactctctcttgaacccctcacagacttaggcgtcagagc |
51239399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 14964335 - 14964278
Alignment:
| Q |
83 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacaccacc |
140 |
Q |
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| T |
14964335 |
cactctctcttgaactcctcattgatttcggcgtcagagcacatgtaggtacaccacc |
14964278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 20693944 - 20693999
Alignment:
| Q |
83 |
cactctctcttgaaccccttattgacttgggcgtcagagcacgtctaggtacacca |
138 |
Q |
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| T |
20693944 |
cactttctcttgaaccccttactgacttgggtgtcggagcacgtgcaggtacacca |
20693999 |
T |
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