View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_17 (Length: 250)
Name: NF15206_low_17
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54216645 - 54216408
Alignment:
| Q |
1 |
gttaaaatacaaaccgtggacatttacaagcaaaaataacaccactgatgcccaaagtattggactgccaaaatcacaaaaacacacattaaaagaaacc |
100 |
Q |
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| T |
54216645 |
gttaaaatacaaaccgtggacatttacaagcaaaaataacaccactgatgcccaaagtattggactgccaaaatcacaaaaacacacattaaaagaaacc |
54216546 |
T |
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| Q |
101 |
aaagtgattaagaaattgaggagtaaaatattcttcaaatcaaagacatgattgcagccaagtgttggcaaatttgtcaagattacctgattcctacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54216545 |
aaagtgattaagaaattgaggagtaaaatattcttcaaatcaaagacatgattgcagccaagtgttggcaaatttgtcaagattacctgattcctacaac |
54216446 |
T |
|
| Q |
201 |
taccttaaagtcatcttctaatgacctcttgatatatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
54216445 |
taccttaaagtcatcttctaatgacctcttgatatatt |
54216408 |
T |
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