View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_18 (Length: 245)
Name: NF15206_low_18
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41122045 - 41122265
Alignment:
| Q |
1 |
cgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggata |
100 |
Q |
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| T |
41122045 |
cgtttgtttggtgtttccaacatggtgaagatgctaaagaatattgatgatgaacatctaaaagatgaagcaatgaaatcaattatctttgagtcggata |
41122144 |
T |
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| Q |
101 |
tgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatct |
200 |
Q |
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| T |
41122145 |
tgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaagaaatct |
41122244 |
T |
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| Q |
201 |
actagcttattgtaaacaaca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41122245 |
actagcttattgtaaacaaca |
41122265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 325120 - 325009
Alignment:
| Q |
1 |
cgtttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggata |
100 |
Q |
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|||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| || |||||||||||||| || | |
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| T |
325120 |
cgtttgtttggtatttccaacatggtgaagacgctaaagtctattgatgatgatcatcataaagatgaagcaatgaagtcgattatttttgagtcagaaa |
325021 |
T |
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| Q |
101 |
tgcgtgcaagat |
112 |
Q |
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| T |
325020 |
tgcgtgcaagat |
325009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 3080694 - 3080569
Alignment:
| Q |
63 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
162 |
Q |
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| T |
3080694 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
3080595 |
T |
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| Q |
163 |
aagaagtctgttgatgagttagatca |
188 |
Q |
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| T |
3080594 |
aataagtcttctaaagagttagatca |
3080569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 3094017 - 3093939
Alignment:
| Q |
63 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
141 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||||||| |
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| T |
3094017 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 3104347 - 3104488
Alignment:
| Q |
3 |
tttgtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatg |
102 |
Q |
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||||||||||||||||||||| |||||| | ||||||| |||| | || | || ||| || || |||||| | ||||||||||||||||||||||| |
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| T |
3104347 |
tttgtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaatggattcaattatttttgagtcggatatt |
3104446 |
T |
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| Q |
103 |
cgtgcaagattccctgctactggatgtctcggtgttattcat |
144 |
Q |
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|||||| |||||| | | ||||||| | |||||||||||| |
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| T |
3104447 |
cgtgcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 36915163 - 36915318
Alignment:
| Q |
60 |
aaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatg |
159 |
Q |
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|||||||| || |||| ||| || ||| ||||||||||||| ||||||| ||| || | | ||||||||| ||||||||| || ||||| ||| |
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| T |
36915163 |
aaaagatgttgcgatgagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttattatggattatggaggtatg |
36915262 |
T |
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| Q |
160 |
ttaaagaagtctgttgatgagttagatcatgtaagaaatctactagcttattgtaa |
215 |
Q |
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|||||| ||||| | || |||||||||||||||| || |||||||||||||||| |
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| T |
36915263 |
ttaaagcagtctatggaagagttagatcatgtaaaaacgttactagcttattgtaa |
36915318 |
T |
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