View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_3 (Length: 590)
Name: NF15206_low_3
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 18014618 - 18015124
Alignment:
| Q |
13 |
taggtactaaagaacattctccagaaatcttagaatgactgaattataaatatgagttttactaaagaacaatctaatttacacagttttactaaagaac |
112 |
Q |
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| T |
18014618 |
taggtactaaagaacattctccagaaatcttagaatgactgaattataaatatgagttttactaaagaacaatctaatttacacagttttactaaagaac |
18014717 |
T |
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| Q |
113 |
atgtataggtacaaaaacagggaagaaacttttacccaacttgtaccctaaattgcttataatttactcaatataatttaacgattattgtgtctcttct |
212 |
Q |
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| T |
18014718 |
atgtataggtacaaaaatagggaagaaacttttacccaacttgtaccctaaattgcttataatttactcaatgtaatttaacgattattgtgtctcttct |
18014817 |
T |
|
| Q |
213 |
atagatatttttgtctacttcagaatggttcaaattttacttaaatatgagttttatatcaaaagttattggtaaattactaacggtgtgtaaaaactac |
312 |
Q |
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| T |
18014818 |
atagatatttttgtctacttcagaatggttcaaattttacttaaatatgagttttatatcaaaagttattggtaaattactaacggtgtgtaaaaactac |
18014917 |
T |
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| Q |
313 |
gaattgcagaattttactcttattccttctctcacatacttaattgaatatactcatcaatttgtcaatataacacactgtaaccatgatatcaaagtat |
412 |
Q |
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| T |
18014918 |
gaattgcagaattttactc-tatttcttctctcacatacttaattgaatatactcatcaatttgtcaatataacacactgtaaccatgatatcaaagtat |
18015016 |
T |
|
| Q |
413 |
aagactaaca-tttacaaataatattagtttaatatccttgacaaattcgatcaaaacaaacacaccaattcaacataaattcttacaatctctatacat |
511 |
Q |
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| T |
18015017 |
aagactaacattttacaaataatattagtttaatatccttgacaaattcgatcaaaacaaacacaccaattcaacataaattcttacaatctctatacat |
18015116 |
T |
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| Q |
512 |
gaagcatg |
519 |
Q |
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|||||||| |
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| T |
18015117 |
gaagcatg |
18015124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 19816886 - 19816977
Alignment:
| Q |
99 |
ttttactaaagaacatgtataggtacaaaaacagggaagaaacttttacccaacttgtaccctaaattgcttataatttactcaatataatt |
190 |
Q |
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| T |
19816886 |
ttttaccaaataacatgtataggtagagaaacaaggaagaaactttaactcaacttgcaacttgaatttcttatactttactcaatgtaatt |
19816977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 28944863 - 28945014
Alignment:
| Q |
80 |
aacaatctaatttacacagttttactaaagaacatgtataggtacaaaaacaggg-aagaaacttttacccaacttgtaccctaaattgcttataattta |
178 |
Q |
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|||||||||||| | ||||||||| ||||||| || ||| |||| |||||||| |||||||||| || ||||||| | ||| ||||||| ||| || | |
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| T |
28944863 |
aacaatctaattcatacagttttatcaaagaacttgcatatatacagaaacagggcaagaaactttaactcaacttgaaacctgaattgctcatacttca |
28944962 |
T |
|
| Q |
179 |
ctcaatataatttaacgattattgtgtctcttctatagatatttttgtctac |
230 |
Q |
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| T |
28944963 |
ctcaatgtaattcaacgattcttgagcctattctgtagatatttttgtctac |
28945014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 27265127 - 27265277
Alignment:
| Q |
95 |
acagttttactaaagaacatgtataggtacaaaaacagggaagaaacttttacccaacttgtaccctaaattgcttataatttactcaatataatttaac |
194 |
Q |
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||||||||||||||||||||||| | ||||| |||||| | |||||||||||| |||||| | | | |||| || ||| |||||||||| |||| ||| |
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| T |
27265127 |
acagttttactaaagaacatgtacatgtacagaaacagagcagaaacttttactcaacttacaacatgaatttctcatactttactcaatgaaattcaac |
27265226 |
T |
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| Q |
195 |
gattattgtgtctcttctatagatatttttgtctacttcagaatggttcaa |
245 |
Q |
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|||| ||| | || |||| ||| ||||||||||||||| | || ||||||| |
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| T |
27265227 |
gattcttgagcctgttctgtaggtatttttgtctactttacaaaggttcaa |
27265277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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