View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_4 (Length: 519)
Name: NF15206_low_4
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 502
Target Start/End: Original strand, 38624995 - 38625487
Alignment:
| Q |
10 |
gcacagagaatgtagatgaatatcatgaatgcaagtgaggtgtcagaggccaaggaccnnnnnnntcacatatcagaatgctatcaaatctcaatttaaa |
109 |
Q |
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| T |
38624995 |
gcacagagaatgtagatgaatatcatgaatgcaagtgaggtgtcagaggccaaggaccaaaaaaatcacatatcagaatgctatcaaatctcagtttaaa |
38625094 |
T |
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| Q |
110 |
tttttatatttgaagtgatcgtgtcaatatattcttccctttcggggatgccgctgtaattggagaacggatggatcagaaatctgaaaatcatctcttc |
209 |
Q |
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| T |
38625095 |
tttttatatttgaagtgatcgtgtcaatatattcttccctttcggggatgccgctgtaattggagaacggatggatcagaaatctgaaaatcatctcttc |
38625194 |
T |
|
| Q |
210 |
caccaatctggtattttaagcctttggctcctatgaactgattgtcttattcctggaagcttgtgcttgatctgtctccacagcatatttacagcatctt |
309 |
Q |
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| T |
38625195 |
caccaatctggtattttaagcctttggctcctatgaactgattgtcttattcctggaagcttgtgcttgatctgtctccacagcatatttacagcatctt |
38625294 |
T |
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| Q |
310 |
ccctttctggtggataatggaattcataatgatgggagatgtttttaagttgcctccacatttcagtccagttctgctttggaaaactgcgaagctgatt |
409 |
Q |
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| T |
38625295 |
ccctttctggtggataatggaattcataatgatgggagatgtttttaagttgcctccacatttcagtccagttctgctttggaaaactgcgaagctgatt |
38625394 |
T |
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| Q |
410 |
gatcatgtagccaggctccagtgcttctttgaaagaaaagaacaatgagaactgagagtagtcaatctcattctcaaatgggagttcaatttt |
502 |
Q |
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| T |
38625395 |
gatcatgtagccaggctccagtgcttctttgaaagaaaagaacaatgagaactgagagtagtcaatctcattctcaaatgggagttcaatttt |
38625487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 261 - 501
Target Start/End: Complemental strand, 34623996 - 34623756
Alignment:
| Q |
261 |
cctggaagcttgtgcttgatctgtctccacagcatatttacagcatcttccctttctggtggataatggaattcataatgatgggagatgtttttaagtt |
360 |
Q |
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|||||||||||||| |||| ||||||||| |||||||| |||||||| || |||| ||| || || ||||||||||||||||||||||||||||||| | |
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| T |
34623996 |
cctggaagcttgtgtttgacctgtctccaaagcatattaacagcatcctctctttttggagggtactggaattcataatgatgggagatgtttttaacct |
34623897 |
T |
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| Q |
361 |
gcctccacatttcagtccagttctgctttggaaaactgcgaagctgattgatcatgtagccaggctccagtgcttctttgaaagaaaagaacaatgagaa |
460 |
Q |
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| T |
34623896 |
gcctccacatttcagtccacttctgttttggaactttacgaagctggtcaaccatgtagccaggctgtaatgcctctttgaaagagaagaacaaagagaa |
34623797 |
T |
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| Q |
461 |
ctgagagtagtcaatctcattctcaaatgggagttcaattt |
501 |
Q |
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| T |
34623796 |
ctgcgagtaatcaatctcatcctcaaaagggagttcaattt |
34623756 |
T |
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