View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_6 (Length: 435)
Name: NF15206_low_6
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 53 - 435
Target Start/End: Original strand, 27873003 - 27873385
Alignment:
| Q |
53 |
gagaaattaagcaatggctactgaagttagttctcttgttagggttctaggtggtggtggatacaaagatgagcaacatcgaacggttggcaatgattct |
152 |
Q |
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| T |
27873003 |
gagaaattaagcaatggctactgaagttagttctcttgttagggttctaggtggtggtggatacaaagatgagcaacatcgaacggttggcaatgattct |
27873102 |
T |
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| Q |
153 |
catggtgagaaatcaacggctctgattacaagagacttgcttggtgggtcctcttcaattgaatcacaagaattggatcttgatttacaggttcctaatg |
252 |
Q |
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| T |
27873103 |
catggtgagaaatcaacggctctgattacaagagacttgcttggtgggtcctcttcaattgaatcccaagaattggatcttgatttacaggttcctaatg |
27873202 |
T |
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| Q |
253 |
gctgggaaaaacgtcttgaccttcaggtattttccttttgtttcccgggaaaatataaattttctcttaggttttaaaaaataaaagatggaaaaagtgt |
352 |
Q |
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| T |
27873203 |
gctgggaaaaacgtcttgaccttcaggtattttccttttgtttcccgggaaaatataaattttctcttaggttttaaaaaataaaagatggaaaaagtgt |
27873302 |
T |
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| Q |
353 |
acacaatgattaataggaattgaaatttcacttttttgtttatggactatgtggaaattgaatcatcgtactttgttgtgttt |
435 |
Q |
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| T |
27873303 |
acacaatgattaataggaattgaaatttcacttttttgtttatggactatgtggaaattgaatcatcgtactttgttgtgttt |
27873385 |
T |
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