View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15206_low_9 (Length: 375)
Name: NF15206_low_9
Description: NF15206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15206_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 31814815 - 31814469
Alignment:
| Q |
18 |
aaactaactcgcccaattaactatttgatgggctggtaagaatactatttcttaatataattattattatgatttaaatttagttaacccattcatattt |
117 |
Q |
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| T |
31814815 |
aaactaactcgcccaattaactatttgatgggctggtaagaatactatttcttaatataattattattatgatttaaatttagttaacccattcatattt |
31814716 |
T |
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| Q |
118 |
aacaacaactaacaaataattccttcaccatgtgttgattgcgacgtttgagagtggtgtagtgccgtaaaaagacttgtcttatgcttcaattgtgata |
217 |
Q |
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| T |
31814715 |
aacaacaactaacaaataattccttcaccatgtgttgattgcgacgtttgagagtggtgtagtgccgtaaaaagacttgtcttatgcttcaattgtgata |
31814616 |
T |
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| Q |
218 |
ataacattcaacaatatgagtatgagatatttaatcaatgaaggtgtggaacgacgacggatgtaacaacaatattagcatgtaatgagaaatcaagtgc |
317 |
Q |
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| T |
31814615 |
ataacattcaacaatatgagtatgagatatttaatcaatgaaggtgtagaacgacgacggatgtaacaacaatattagcatgtaatgataaatcaagtgc |
31814516 |
T |
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| Q |
318 |
attagtgacacttaactttagcaaataattaaacaattgttgagtat |
364 |
Q |
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| T |
31814515 |
attagtgacacttatctttagcaactaattaaacaattgttgagtat |
31814469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 24250228 - 24250348
Alignment:
| Q |
34 |
ttaactatttgatgggctggtaagaata--ctatttcttaatataattattattatgatttaaatttagttaacccattcatatttaacaacaactaaca |
131 |
Q |
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| T |
24250228 |
ttaactatttgatgggctgataagaatatactatttcttaatatatttattct---gatttaaatttagttaacccat----atttaacaacaactagca |
24250320 |
T |
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| Q |
132 |
aataattccttcaccatgtgttgattgc |
159 |
Q |
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||||| |||| |||||||||| |||||| |
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| T |
24250321 |
aataactcctccaccatgtgtcgattgc |
24250348 |
T |
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