View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15207_high_2 (Length: 565)

Name: NF15207_high_2
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15207_high_2
NF15207_high_2
[»] chr2 (7 HSPs)
chr2 (26-551)||(19142092-19142616)
chr2 (434-550)||(19140475-19140591)
chr2 (406-519)||(39023507-39023619)
chr2 (309-348)||(11188080-11188119)
chr2 (188-274)||(45454143-45454227)
chr2 (252-304)||(28493565-28493617)
chr2 (208-283)||(30720059-30720135)
[»] chr4 (4 HSPs)
chr4 (395-519)||(7639771-7639894)
chr4 (188-272)||(26060791-26060873)
chr4 (208-283)||(24605006-24605082)
chr4 (188-247)||(15404833-15404892)
[»] chr5 (2 HSPs)
chr5 (447-533)||(40293300-40293386)
chr5 (196-283)||(21335454-21335538)
[»] scaffold0134 (1 HSPs)
scaffold0134 (188-283)||(7521-7617)
[»] chr6 (3 HSPs)
chr6 (208-283)||(9313544-9313620)
chr6 (208-283)||(12980495-12980571)
chr6 (208-283)||(16731613-16731689)
[»] chr1 (4 HSPs)
chr1 (442-509)||(1192709-1192776)
chr1 (208-283)||(22456495-22456571)
chr1 (208-274)||(29642993-29643056)
chr1 (208-274)||(42022927-42022990)
[»] scaffold1755 (1 HSPs)
scaffold1755 (193-274)||(430-508)
[»] chr3 (1 HSPs)
chr3 (188-272)||(19304432-19304513)
[»] scaffold0757 (1 HSPs)
scaffold0757 (194-276)||(5647-5726)
[»] scaffold0045 (1 HSPs)
scaffold0045 (208-274)||(90057-90120)
[»] chr8 (2 HSPs)
chr8 (208-283)||(587597-587673)
chr8 (208-283)||(626249-626325)
[»] chr7 (1 HSPs)
chr7 (188-283)||(22083181-22083277)


Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 26 - 551
Target Start/End: Original strand, 19142092 - 19142616
Alignment:
26 atgcactgcaatttgatgtaatggttgagttcgattatttttaaagttgtatccggaggaaatgcttgtctaaatttggattttgaaatataattcaatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
19142092 atgcactgcaatttgatgtaatggttgagttcgattatttttaaagttgtatccggaggaaatgcttgtctaattttggattttgaaatataattcaatt 19142191  T
126 cacgtgacaaaaatctaataataaaatttccttgttgaaatgattcaacaatctttgatagaggcgtcaaaaacttgttaggcttttaacaaatgtacta 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19142192 cacgtgacaaaaatctaataataaaattgccttgttgaaatgattcaacaatctttgatagaggcgtcaaaaacttgttaggcttttaacaaatgtacta 19142291  T
226 aaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgtttcaatttccactacgcaatgtcgttattacctttaatcaatcccttaagt 325  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
19142292 aaaatgcaatgaagtaataaaagtataaatttgtattcagaaggactgtttcaatttccactaggcaatgttgttattacttttgatcaatcccttaagt 19142391  T
326 cagagttctcttcatagattacagttccctaacatttcttaaaccatcatgcgttcctagactgacaattttaattaaatagttaaattagatctgagtt 425  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||    
19142392 cagagttctcttcatagattagagttccctaacatttcttaaaccatcatgctttcctagactgacaattttaattaaatagttaaattagat-aaagtt 19142490  T
426 taaaaggtatggttagtagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagat 525  Q
    ||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19142491 taaaaggtatgatcagtagttattcaatctttgcaatcaattaaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagat 19142590  T
526 ttgcattatcaaagatagtgtttcat 551  Q
    ||||||||||||| ||||||||||||    
19142591 ttgcattatcaaatatagtgtttcat 19142616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 550
Target Start/End: Complemental strand, 19140591 - 19140475
Alignment:
434 atggttagtagttattcaatctttgaaatcaatttaaatatgattagg-atataaaaggcattgcacacaaattaaattgaataaaactagatttgcatt 532  Q
    ||||||||||||  ||| |||||||||||||||||| ||||||| |   ||||||||  |||||||| ||||||||| | ||||||||||||| || |||    
19140591 atggttagtagtcgttccatctttgaaatcaatttatatatgatcaaacatataaaaa-cattgcacccaaattaaactaaataaaactagatatgtatt 19140493  T
533 atcaaagatagtgtttca 550  Q
    |||||| ||||| |||||    
19140492 atcaaaaatagtatttca 19140475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 519
Target Start/End: Original strand, 39023507 - 39023619
Alignment:
406 agttaaattagatctgagtttaaaaggtatggttagtagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaat 505  Q
    |||| |||||||||| |||| ||| | |||| | ||||||| ||||||||||||||||| | || || |||| | ||||||||| | |||   |||||||    
39023507 agtttaattagatctaagttgaaa-gttatgataagtagttgttcaatctttgaaatcagtctatatgtgatcaagatataaaaagaattaggcacaaat 39023605  T
506 taaattgaataaaa 519  Q
    ||||||||||||||    
39023606 taaattgaataaaa 39023619  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 11188119 - 11188080
Alignment:
309 taatcaatcccttaagtcagagttctcttcatagattaca 348  Q
    ||||||||||||| |||||||||||||||| |||||||||    
11188119 taatcaatcccttgagtcagagttctcttcttagattaca 11188080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 45454227 - 45454143
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgt 274  Q
    |||| |||||||||| ||| |||||| ||| ||||||||| |||||  ||||||||||||   ||| ||||||||||| ||||||||    
45454227 ggcgccaaaaacttgatagacttttagcaagtgtactaaatatgcatcgaagtaataaaa--ttaagtttgtatccacgaggactgt 45454143  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28493565 - 28493617
Alignment:
252 aaatttgtatccacaaggactgtttcaatttccactacgcaatgtcgttatta 304  Q
    |||||||| |||| |  ||| ||||||||||| ||||||||||||||||||||    
28493565 aaatttgtctccatacagaccgtttcaatttctactacgcaatgtcgttatta 28493617  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 30720135 - 30720059
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||| ||| ||||||||||||  |  |||||||||||| | |||| |||||||||||| || |||||||||||||    
30720135 cttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagtttgtatccacaggggctgtttcaatttc 30720059  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 519
Target Start/End: Original strand, 7639771 - 7639894
Alignment:
395 tttaattaaatagttaaattagatctgagtttaaaaggtatggttagtagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcat 494  Q
    ||||||| || ||||||||||||||| ||| ||| |  |||| | |||||| ||||||||| |||||||| | || |||||||||| ||||||||  |||    
7639771 tttaattgaacagttaaattagatctaagtctaagaactatg-tcagtagtcattcaatctatgaaatcattctatatatgattagtatataaaaaacat 7639869  T
495 tgcacacaaattaaattgaataaaa 519  Q
    |||| ||||||||||||||||||||    
7639870 tgcatacaaattaaattgaataaaa 7639894  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 26060873 - 26060791
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggact 272  Q
    ||||||||||||||| ||| |||||| ||| ||||||||||||| |  ||||||||||||  |||| || |||||||| ||||||    
26060873 ggcgtcaaaaacttgatagacttttagcaagtgtactaaaaatgtatcgaagtaataaaa--ataagttcgtatccacgaggact 26060791  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 24605006 - 24605082
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaag-tataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||| ||| ||||||||||||  |  ||||||||||||  ||||| || ||||||||||||||||||||||||||    
24605006 cttttagcaagtgtactaaaaatatatcgaagtaataaaatctataagttcgtatccacaaggactgtttcaatttc 24605082  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 15404833 - 15404892
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaa 247  Q
    ||||||||||||||| ||| |||||| ||| ||||||||| |||||  ||||||||||||    
15404833 ggcgtcaaaaacttgatagacttttagcaagtgtactaaatatgcatcgaagtaataaaa 15404892  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 40293386 - 40293300
Alignment:
447 attcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagatttgcatta 533  Q
    ||||||||||||||||||||||| ||||||| | ||||||||| | |||||||| ||||||||   |||||||||| ||||||||||    
40293386 attcaatctttgaaatcaatttatatatgatcaagatataaaaagtattgcacataaattaaacataataaaactatatttgcatta 40293300  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 21335454 - 21335538
Alignment:
196 aaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgtttcaatttc 283  Q
    ||||||| ||| |||||||||| ||||||||||||| |  |||||||||||   |||| ||||||||||| |||||||| | ||||||    
21335454 aaacttgatagacttttaacaagtgtactaaaaatgtatcgaagtaataaa---ataagtttgtatccacgaggactgtgttaatttc 21335538  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 7617 - 7521
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||| |||||||||| ||  |||||| ||| ||||||||||||  |  |||||||||||| | |||| || ||||||||||||||||||||||||||    
7617 ggcgccaaaaacttgataaacttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttc 7521  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 9313544 - 9313620
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||||||| ||||||||||||  |  |||||||||||| | |||| || ||||||||||||||||||||||||||    
9313544 cttttaacaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttc 9313620  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 12980495 - 12980571
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||| ||| ||||||||||||  | ||||||||||||| | |||| || ||||||||| ||||||||||||||||    
12980495 cttttagcaagtgtactaaaaataaattgaagtaataaaatttataagttcgtatccacatggactgtttcaatttc 12980571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 16731689 - 16731613
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||| ||| ||||||||||||  |  |||||||||||| | |||| || ||||||||| ||||||||||||||||    
16731689 cttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 16731613  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 509
Target Start/End: Complemental strand, 1192776 - 1192709
Alignment:
442 tagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaa 509  Q
    |||| ||||||||||||||||||||||| ||||||| |  ||||||||  |||||||||||| |||||    
1192776 tagtcattcaatctttgaaatcaatttatatatgatcacaatataaaaaacattgcacacaacttaaa 1192709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 22456495 - 22456571
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||| ||| ||||||||||||  |  |||||||||||| | |||| || ||||||||| ||||||||||||||||    
22456495 cttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 22456571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 29642993 - 29643056
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgt 274  Q
    |||||| ||| ||||||||||||||| ||||||||||||   |||| || |||||||| ||||||||    
29642993 cttttagcaagtgtactaaaaatgcattgaagtaataaa---ataagttcgtatccacgaggactgt 29643056  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 42022990 - 42022927
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgt 274  Q
    |||||| ||||| ||||||||||||| ||||||||||||   |||| || |||||||| ||||||||    
42022990 cttttagcaaatatactaaaaatgcattgaagtaataaa---ataagttcgtatccacgaggactgt 42022927  T

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Target: scaffold1755 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 508 - 430
Alignment:
193 caaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgt 274  Q
    |||||||||| ||| |||||| ||| |||| |||||||||| | ||||||||||   |||| ||||||||||| ||||||||    
508 caaaaacttgatagacttttatcaagtgtattaaaaatgcatttaagtaataaa---ataagtttgtatccacgaggactgt 430  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 19304432 - 19304513
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggact 272  Q
    |||| |||||||||| ||| |||||| ||| |||||||||| ||||  |||||||||||   |||| ||||||||||| ||||||    
19304432 ggcgccaaaaacttgatagacttttagcaagtgtactaaaattgcatcgaagtaataaa---ataagtttgtatccacgaggact 19304513  T

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Target: scaffold0757 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 5726 - 5647
Alignment:
194 aaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgttt 276  Q
    ||||||||| ||| |||||| ||| |||||||||| ||||  |||||||||||   |||| || |||||||| ||||||||||    
5726 aaaaacttgatagacttttagcaagtgtactaaaactgcatcgaagtaataaa---ataagttcgtatccacgaggactgttt 5647  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 90120 - 90057
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaagtataaatttgtatccacaaggactgt 274  Q
    |||||| ||| |||||||||||||||  |||||||||||   |||| ||||||||||| ||||||||    
90120 cttttagcaagtgtactaaaaatgcatcgaagtaataaa---ataagtttgtatccacgaggactgt 90057  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 587673 - 587597
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaa-gtataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||||||| |||| |||||||  || ||||||||||||  ||||| || |||||| || ||||||||||||||||    
587673 cttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttc 587597  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 626249 - 626325
Alignment:
208 cttttaacaaatgtactaaaaatgcaatgaagtaataaaa-gtataaatttgtatccacaaggactgtttcaatttc 283  Q
    |||||||||| |||| |||||||  || ||||||||||||  ||||| || |||||| || ||||||||||||||||    
626249 cttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttc 626325  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 283
Target Start/End: Original strand, 22083181 - 22083277
Alignment:
188 ggcgtcaaaaacttgttaggcttttaacaaatgtactaaaaatgcaatgaagtaataaaagt-ataaatttgtatccacaaggactgtttcaatttc 283  Q
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22083181 ggcgccaaaaacttgatagacttttagcaagtgtactaaaattatatcgaagcaataaaatttataagttcgtatccacagggactgtttcaatttc 22083277  T

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