View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15207_high_3 (Length: 468)
Name: NF15207_high_3
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15207_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 44286846 - 44287233
Alignment:
| Q |
19 |
aagtaattattgtttttgacaagtgtggttggaaatttgcatagatgttcatcagagcaggctagcaccgattgaagaaggcaagacttgatttttggtg |
118 |
Q |
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| T |
44286846 |
aagtaattattgtttttgacaagtgtggttggaaatttgcatagatgttcatcagagcaggctagcaccgattgaagaaggcaagacttgatttttggtg |
44286945 |
T |
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| Q |
119 |
tttgagcagatataaataagggataatcaattgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcacgta------------caa |
206 |
Q |
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| T |
44286946 |
tttgagcagatataaataagggataatcaaatgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcacgtaatgatactgttacaa |
44287045 |
T |
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| Q |
207 |
tgttagaagcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagacttccaaaaccacaccaac |
306 |
Q |
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| T |
44287046 |
tgttagaagcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagacttccaaaaccacaccaac |
44287145 |
T |
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| Q |
307 |
acctccacatgcagcatgaatagttgaaactttgcaactccaattatgacaatctttgggtccccaaagtacaacttaatgacctttg |
394 |
Q |
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| T |
44287146 |
acctccacatgcagcatgaatagttgaaactttgcaactccaattatgacaatcttcgggtccccaaagtacaacttaatgacctttg |
44287233 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 28007368 - 28007417
Alignment:
| Q |
400 |
ccactgatatagcaagcattgtattgtacgatcgtgatgaggcttcgatg |
449 |
Q |
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| T |
28007368 |
ccactgatatatcaagcattgtattgtacgatcttgatgaggcttcgatg |
28007417 |
T |
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