View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15207_low_1 (Length: 600)

Name: NF15207_low_1
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15207_low_1
NF15207_low_1
[»] chr7 (2 HSPs)
chr7 (1-583)||(31260915-31261511)
chr7 (402-430)||(8874229-8874257)
[»] chr4 (20 HSPs)
chr4 (379-439)||(4375034-4375094)
chr4 (378-439)||(12172831-12172892)
chr4 (378-439)||(12174181-12174242)
chr4 (378-439)||(12174847-12174908)
chr4 (378-439)||(12175189-12175250)
chr4 (378-439)||(12177396-12177457)
chr4 (378-439)||(12182113-12182174)
chr4 (379-439)||(52268735-52268795)
chr4 (378-439)||(12179300-12179361)
chr4 (378-439)||(12180539-12180600)
chr4 (378-439)||(12185022-12185083)
chr4 (378-439)||(12185366-12185427)
chr4 (378-439)||(12187014-12187075)
chr4 (378-439)||(12189008-12189069)
chr4 (378-437)||(12170125-12170184)
chr4 (375-417)||(12894211-12894253)
chr4 (378-439)||(12178633-12178694)
chr4 (378-439)||(12184016-12184077)
chr4 (378-439)||(12187358-12187419)
chr4 (382-439)||(12189351-12189408)
[»] chr8 (1 HSPs)
chr8 (382-439)||(38136621-38136678)
[»] chr6 (3 HSPs)
chr6 (378-439)||(16477142-16477203)
chr6 (378-436)||(16476715-16476773)
chr6 (378-435)||(15052289-15052346)
[»] chr5 (3 HSPs)
chr5 (378-439)||(3153540-3153601)
chr5 (378-439)||(21825707-21825768)
chr5 (378-430)||(25904796-25904848)
[»] chr2 (51 HSPs)
chr2 (378-439)||(24620819-24620880)
chr2 (378-439)||(24621142-24621203)
chr2 (378-439)||(24621465-24621526)
chr2 (378-439)||(24621749-24621810)
chr2 (378-439)||(24622068-24622129)
chr2 (378-439)||(24622387-24622448)
chr2 (378-439)||(24622671-24622732)
chr2 (378-439)||(24622955-24623016)
chr2 (378-439)||(24623274-24623335)
chr2 (378-439)||(24623558-24623619)
chr2 (378-439)||(24623877-24623938)
chr2 (378-439)||(24624470-24624531)
chr2 (378-439)||(24624789-24624850)
chr2 (378-439)||(24625073-24625134)
chr2 (378-439)||(24625392-24625453)
chr2 (378-439)||(24625715-24625776)
chr2 (378-439)||(24626034-24626095)
chr2 (378-439)||(24626358-24626419)
chr2 (378-439)||(24626681-24626742)
chr2 (378-439)||(24626965-24627026)
chr2 (378-439)||(24627284-24627345)
chr2 (378-439)||(24627568-24627629)
chr2 (378-439)||(24630883-24630944)
chr2 (378-439)||(24631167-24631228)
chr2 (378-439)||(24631451-24631512)
chr2 (378-439)||(24632054-24632115)
chr2 (378-439)||(24632338-24632399)
chr2 (378-439)||(24632657-24632718)
chr2 (378-439)||(24632941-24633002)
chr2 (378-439)||(24633225-24633286)
chr2 (378-439)||(24633544-24633605)
chr2 (378-439)||(24633863-24633924)
chr2 (378-439)||(24634147-24634208)
chr2 (378-439)||(24634466-24634527)
chr2 (378-439)||(24634750-24634811)
chr2 (378-439)||(24635302-24635363)
chr2 (378-439)||(24635625-24635686)
chr2 (378-439)||(24636326-24636387)
chr2 (378-439)||(24636649-24636710)
chr2 (378-439)||(24636972-24637033)
chr2 (378-439)||(24637574-24637635)
chr2 (378-439)||(24637897-24637958)
chr2 (378-439)||(24638510-24638571)
chr2 (378-439)||(24638829-24638890)
chr2 (378-439)||(24639148-24639209)
chr2 (378-439)||(24639501-24639562)
chr2 (378-439)||(24639824-24639885)
chr2 (378-439)||(24640147-24640208)
chr2 (378-439)||(24631770-24631831)
chr2 (378-439)||(3348116-3348177)
chr2 (377-421)||(2400738-2400782)
[»] chr3 (4 HSPs)
chr3 (378-439)||(16990035-16990096)
chr3 (379-418)||(35898673-35898712)
chr3 (492-558)||(20995596-20995662)
chr3 (378-439)||(3732648-3732709)
[»] scaffold1024 (1 HSPs)
scaffold1024 (384-439)||(1-56)


Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 31261511 - 31260915
Alignment:
Q  1 attgttctttttcttatttcaataaatttaattataaaactcattcataataagtgtttgagaagatagacattgtgacaca--tccacaagttcgatga 98  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  31261511 attgttcttttttttatttcaataaatttaatgataaaactcattcacaataagtgtt-gagaagatagacattgtgacacacatccacaagttcgatga 31261413  T
Q  99 tcctacatgattgtaatttaatgatgatttgtgaatcaaaacgaattcagctcaatcaaactcaacatatttcacctcaaaatcttaaatttagcatata 198  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  31261412 tcctacatgattgtaatttaatgatgatttgtgaatcacaacgaattcagctcaatcgaactcaacatatttcacttcaaaatcttaaatttagcatata 31261313  T
Q  199 caaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactcttcacatcttcgatcacaaattcatttgagcatggtttgatctgc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  31261312 caaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactctttacatcttcgatcacaaattcatttgagcatggttcgatctgc 31261213  T
Q  299 ttttaactactctttgctttcgccgttgagttctcaaaagtttgagaatgtgtttggtttgtttatcca-------------gtgattgaaagtgcgatc 385  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||    
T  31261212 ctttaactactctttgctttcgccgttgagttctcaaaagtttgagaatgtgtttggtttgtttattcaatgattggttcttttgattgaaagtgcgatc 31261113  T
Q  386 ataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttgaactagaataatagtgagtgatctcttgagaagtcttgtgttgcac 485  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31261112 atatcaacactaatgtaccggatctcatcagaactctgcagttaaacgtgcttgaactagagtaatagtgagtgatctcttgagaagtcttgtgttgcac 31261013  T
Q  486 ttatcgaagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacgctaaacgtgagtggtgttgaagttg 583  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31261012 ttatctaagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacgctaaacgtgagtggtgttgaagttg 31260915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 8874257 - 8874229
Alignment:
Q  402 atcggatctcatcagaactctgcagttaa 430  Q
    |||||||||||||||||||||||||||||    
T  8874257 atcggatctcatcagaactctgcagttaa 8874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 4375094 - 4375034
Alignment:
Q  379 tgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||||| | ||||||    
T  4375094 tgcgatcataccagcactaatgcatcggatatcatcagaactctgcagttaagcatgcttg 4375034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12172892 - 12172831
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12172892 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12172831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12174242 - 12174181
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12174242 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12174908 - 12174847
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12174908 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12175250 - 12175189
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12175250 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12175189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12177457 - 12177396
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12177457 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12177396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12182174 - 12182113
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||| || |||||||| | |||||| |||||||||||||||||||| ||||||||    
T  12182174 gtgcgatcatatcagcactaatgcaccggatcccatcagaactctgcagttaagcgtgcttg 12182113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 52268795 - 52268735
Alignment:
Q  379 tgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  52268795 tgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 52268735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12179361 - 12179300
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||||||||||||||| | |||||| ||| ||||||| |||||||| ||| ||||    
T  12179361 gtgcgatcataccaacactaatgcaccggatcccattagaactccgcagttaagcgttcttg 12179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12180600 - 12180539
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||| || |||||||| | |||||| ||| |||||||||||||||| ||||||||    
T  12180600 gtgcgatcatatcagcactaatgcaccggatcccattagaactctgcagttaagcgtgcttg 12180539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12185083 - 12185022
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12185083 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12185022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12185427 - 12185366
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12185427 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12185366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12187075 - 12187014
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12187075 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12187014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12189069 - 12189008
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||||||||  |||||||    
T  12189069 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaattgtgcttg 12189008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 12170184 - 12170125
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgct 437  Q
    ||||| |||||||| |||| ||| | |||||| |||||||||||||||||||| ||||||    
T  12170184 gtgcgttcataccagcactgatgcaccggatcccatcagaactctgcagttaagcgtgct 12170125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 12894253 - 12894211
Alignment:
Q  375 aaagtgcgatcataccaacactaatgtatcggatctcatcaga 417  Q
    |||||||||||||||||||||||||| | ||||| ||||||||    
T  12894253 aaagtgcgatcataccaacactaatgcaccggatttcatcaga 12894211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12178694 - 12178633
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||| |||| || |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12178694 gtgcgaccatatcagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12178633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12184077 - 12184016
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||| || |||||||| | |||||| ||||||||||| |||||||  ||||||||    
T  12184077 gtgcgatcatatcagcactaatgcaccggatcccatcagaactccgcagttacgcgtgcttg 12184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 12187419 - 12187358
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||| | ||||||||||| ||| |||| ||||||||    
T  12187419 gtgcgatcataccagcactaatgcaccggagcccatcagaactcagcaattaagcgtgcttg 12187358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 12189408 - 12189351
Alignment:
Q  382 gatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||| |||||||| | |||||| ||||||||||| ||||||||  |||||||    
T  12189408 gatcataccatcactaatgcaccggatcccatcagaactccgcagttaattgtgcttg 12189351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 38136621 - 38136678
Alignment:
Q  382 gatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||||||||| | ||||||| |||||||||||||||||  |||||||||||||||||    
T  38136621 gatcataccaatattaatgtaccggatctcatcagaacttcgcagttaaacgtgcttg 38136678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 16477203 - 16477142
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  16477203 gtgcgatcataccagcactaatgcaccggatcccatcagaactctgcagtcaagcgtgcttg 16477142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 16476773 - 16476715
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgc 436  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| |||||    
T  16476773 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgc 16476715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 15052289 - 15052346
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtg 435  Q
    |||||||||||||| || ||||  ||| |||| |||||||||||||||||||||||||    
T  15052289 gtgcgatcataccagcagtaatacatcagatcccatcagaactctgcagttaaacgtg 15052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 3153601 - 3153540
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  3153601 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 3153540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 21825707 - 21825768
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  21825707 gtgcgatcataccagcactaatgcaccggatcccatcagaactctgcagtcaagcgtgcttg 21825768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 25904848 - 25904796
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaa 430  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||||||||    
T  25904848 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaa 25904796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24620880 - 24620819
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24620880 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24620819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24621203 - 24621142
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621203 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24621526 - 24621465
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621526 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24621810 - 24621749
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621810 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24622129 - 24622068
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622129 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24622448 - 24622387
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622448 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24622732 - 24622671
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622732 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24623016 - 24622955
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623016 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24623335 - 24623274
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623335 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24623619 - 24623558
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623619 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24623938 - 24623877
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623938 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24624531 - 24624470
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24624531 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24624470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24624850 - 24624789
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24624850 gtgcgatcataccagcactaatgcagcggatcccatcagaactccgcagttaagcgtgcttg 24624789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24625134 - 24625073
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625134 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24625453 - 24625392
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625453 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24625776 - 24625715
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625776 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24626095 - 24626034
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626095 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24626419 - 24626358
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626419 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24626742 - 24626681
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626742 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24627026 - 24626965
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627026 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24627345 - 24627284
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627345 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24627284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24627629 - 24627568
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627629 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24627568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24630944 - 24630883
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24630944 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24630883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24631228 - 24631167
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631228 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24631512 - 24631451
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631512 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24632115 - 24632054
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632115 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24632399 - 24632338
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632399 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24632718 - 24632657
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632718 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24633002 - 24632941
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633002 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24633286 - 24633225
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633286 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24633605 - 24633544
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633605 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24633924 - 24633863
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633924 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24634208 - 24634147
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634208 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24634527 - 24634466
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634527 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24634811 - 24634750
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634811 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24635363 - 24635302
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24635363 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24635302  T

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Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24635686 - 24635625
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24635686 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24635625  T

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Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24636387 - 24636326
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24636387 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636326  T

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Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24636710 - 24636649
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24636710 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636649  T

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Target: chr2; HSP #40
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24637033 - 24636972
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637033 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636972  T

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Target: chr2; HSP #41
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24637635 - 24637574
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637635 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24637574  T

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Target: chr2; HSP #42
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24637958 - 24637897
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637958 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24637897  T

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Target: chr2; HSP #43
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24638571 - 24638510
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24638571 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24638510  T

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Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24638890 - 24638829
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24638890 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24638829  T

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Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24639209 - 24639148
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639209 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639148  T

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Target: chr2; HSP #46
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24639562 - 24639501
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639562 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639501  T

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Target: chr2; HSP #47
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24639885 - 24639824
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639885 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639824  T

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Target: chr2; HSP #48
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24640208 - 24640147
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24640208 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24640147  T

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Target: chr2; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 24631831 - 24631770
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||  |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631831 gtgcgatcataccngcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631770  T

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Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 3348177 - 3348116
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    ||||| |||||||| | |||||| | |||||| ||||||||||| |||||||| ||||||||    
T  3348177 gtgcggtcataccagcgctaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 3348116  T

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Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 2400738 - 2400782
Alignment:
Q  377 agtgcgatcataccaacactaatgtatcggatctcatcagaactc 421  Q
    |||||||||||||||||| |||||||||| || | ||||||||||    
T  2400738 agtgcgatcataccaacaataatgtatcgaatttgatcagaactc 2400782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 16990035 - 16990096
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||| ||| |||  | |||||| ||||||||||| |||||||||||||||||    
T  16990035 gtgcgatcataccagcaccaatccaccggatcccatcagaactccgcagttaaacgtgcttg 16990096  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 35898712 - 35898673
Alignment:
Q  379 tgcgatcataccaacactaatgtatcggatctcatcagaa 418  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  35898712 tgcgatcatatcaacactaatgtatcggatcccatcagaa 35898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 20995596 - 20995662
Alignment:
Q  492 aagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacg 558  Q
    |||||||||||||||| |||| |||| |||||| ||||||||| ||| |||| ||||| ||| ||||    
T  20995596 aagcctatttaacatgatatgagagccggttaaagattgcaatgtggaaattagacccgggcccacg 20995662  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 3732648 - 3732709
Alignment:
Q  378 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||||||||  |||||||| | ||||||| |||||||||| |||||||| ||| ||||    
T  3732648 gtgcgatcataccggcactaatgcaccggatctgatcagaactccgcagttaagcgtacttg 3732709  T

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Target: scaffold1024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 1 - 56
Alignment:
Q  384 tcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 439  Q
    |||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  1 tcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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