View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15207_low_4 (Length: 374)
Name: NF15207_low_4
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15207_low_4 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 31294450 - 31294089
Alignment:
| Q |
13 |
ataccttcaaattatgtacgtagttcttgaacttttcctcaaatctaaattaacagtgactgaacttgttttgtttttacaatcacatgtatgatatatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31294450 |
ataccttcaaattatgtacgtagttcttgaacttttcctcaaatctaaattaacagtgactgaacttgttttgtttttacaatcacatgtatgatatatt |
31294351 |
T |
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| Q |
113 |
attttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatgatg |
212 |
Q |
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| T |
31294350 |
attttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatgatg |
31294251 |
T |
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| Q |
213 |
aatatccgtaacatgtatgatttgtctcttaatttactttttcttgtttttggtcattaatttttcttatgatcttaacagatcagtcttatttcacatt |
312 |
Q |
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| T |
31294250 |
aatatccgtaacatgtatgatttgtctcttactttactttttctggtttttggtcattaatttttcttatgatcttaacagatcagtcttatttcacatt |
31294151 |
T |
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| Q |
313 |
ctttgtaagacttcaattcagtttttgtggactagtagtaattacctgaaaaatgagctaac |
374 |
Q |
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| T |
31294150 |
ctttgtaagacttcaattcagtttttgtggactagtagtaattacctgaaaaatgagctaac |
31294089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 31257209 - 31257088
Alignment:
| Q |
121 |
tgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatgatgaatatccg |
220 |
Q |
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| T |
31257209 |
tgacaaactctttatctccctctctatattacagcgacctctctcgcaatttcttgaacggtacgattcctaaagaatggggctccatgatgaatattcg |
31257110 |
T |
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| Q |
221 |
taacatgtatgatttgtctctt |
242 |
Q |
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| T |
31257109 |
taacatgtatgatttgtctctt |
31257088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 31388724 - 31388524
Alignment:
| Q |
14 |
taccttcaaattatgtacgtagttcttgaacttttcctcaaat--ctaaattaacagt--gactgaacttgttttgtttttacaatcacatgtatg-ata |
108 |
Q |
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||||||||||||||||| ||| |||| ||||||||||||||| ||||| |||| | ||||||||||||||| | ||| ||||||||| ||| ||| |
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| T |
31388724 |
taccttcaaattatgtatgtatttctcaaacttttcctcaaatatctaaaacaacattatgactgaacttgttttatcttttcaatcacatttatctata |
31388625 |
T |
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| Q |
109 |
tattattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccat |
208 |
Q |
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||||||||||||||||| ||| |||||| ||| ||||||||| || ||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
31388624 |
tattattttgcatgacaaacttcttctcttcct--------tacagtgacctcactcgcaactacttgaatggtacaattcctaaagaatggggttccat |
31388533 |
T |
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| Q |
209 |
gatgaatat |
217 |
Q |
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|| |||||| |
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| T |
31388532 |
gaagaatat |
31388524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 31308750 - 31308658
Alignment:
| Q |
148 |
attacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatgatgaatatccgtaacatgtatgatttgtctc |
240 |
Q |
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| T |
31308750 |
attacagcgacctctctcgcaattacttgaatggtacaattccgaaacaatggggctccatgatgaatattattaaaatgtatgatttgtctc |
31308658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 31417683 - 31417911
Alignment:
| Q |
14 |
taccttcaaattatgtacgtagttcttgaacttttcctcaaatctaaattaacagtg--actgaacttgttttgtttttacaatcacatgtatg-atata |
110 |
Q |
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||||||||| ||||||||||| ||| | |||||| ||||| ||| ||||| ||| | | |||||||||||| | ||| ||||||| ||||| ||||| |
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| T |
31417683 |
taccttcaagttatgtacgtaattcctaaactttccctcatatccaaattcacaatattattgaacttgttttatattttcaatcacttgtatctatata |
31417782 |
T |
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| Q |
111 |
ttattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatga |
210 |
Q |
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||||||||||||||| |||| | |||||||||| ||||||||||| | |||||||| ||||||| ||| | ||||||||||||||||||||| ||| |
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| T |
31417783 |
ttattttgcatgacaaactcctactctccctct----attacagtgacctagctcgcaataacttgaaaggtccgattcctaaagaatggggctccttga |
31417878 |
T |
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| Q |
211 |
tgaatatccgtaacatgtatgatttgtctctta |
243 |
Q |
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||||| ||| ||||||| |||||||||| |
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| T |
31417879 |
caaatatttataaattgtatgagttgtctctta |
31417911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 31361930 - 31361833
Alignment:
| Q |
109 |
tattattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccat |
208 |
Q |
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||||||||||||||||| ||||||||||||| ||| |||||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
31361930 |
tattattttgcatgacaaactctttctctccgtct----attacagtgaactccctcgcaattaccttaacggtccaattcctaaagaatggggctccat |
31361835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 31283227 - 31283096
Alignment:
| Q |
90 |
tacaatcacatgtatg-atatattattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaatt |
188 |
Q |
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||||||||||||||| | |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||||| ||| || || |||||| |
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| T |
31283227 |
tacaatcacatgtatctaaatattattttgcttgacaaactccttctctccctctctctattacagtgacctcactcgcaactacctgggtggcacaatt |
31283128 |
T |
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| Q |
189 |
cctaaagaat---ggggctccatgatgaatat |
217 |
Q |
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| T |
31283127 |
cttaaagaatgggggggctccatgatgaatat |
31283096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 31376355 - 31376248
Alignment:
| Q |
106 |
atatattattttgcatgacacactctttctctccctctctcaattacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctc |
205 |
Q |
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|||||||||||||| ||||| ||| |||||| ||| | ||||||||||| || ||||||| ||| | |||||||||||||||||||||||||| |
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| T |
31376355 |
atatattattttgcttgacaaacttcttctcttccttt----attacagtgacctcactcgcaactaccttggtggtacaattcctaaagaatggggctc |
31376260 |
T |
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| Q |
206 |
catgatgaatat |
217 |
Q |
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|||||||||||| |
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| T |
31376259 |
catgatgaatat |
31376248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 31257298 - 31257242
Alignment:
| Q |
11 |
caataccttcaaattatgtacgtagttcttgaacttttcctcaaatctaaattaaca |
67 |
Q |
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|||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||| |
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| T |
31257298 |
caataccttcaatttatgtatgtaattctcaaacttttcctcaaatctaaattaaca |
31257242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 36214845 - 36214783
Alignment:
| Q |
148 |
attacagtgacttctctcgcaattacttgaacggtacaattcctaaagaatggggctccatga |
210 |
Q |
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||||||||||| | || |||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
36214845 |
attacagtgacctttcccgcaattacttgaatggtacaattcctgatgaatggggctccatga |
36214783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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