View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15207_low_5 (Length: 359)
Name: NF15207_low_5
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15207_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 142 - 342
Target Start/End: Complemental strand, 19140677 - 19140475
Alignment:
| Q |
142 |
atctatgatcccaattaaagcatcatttattcctagaatcacccgttctattaaacactttaactagatcaaagtttaaa--ataaatggtcagtaatca |
239 |
Q |
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| T |
19140677 |
atctatgatcccaattaaagcatcatttattcctagaatcacccgttcaattaaacactttaactagatcaaagtttaaattataaatggttagtagtcg |
19140578 |
T |
|
| Q |
240 |
ttccatctttaaaatcaatttatatatgatc-aacaaataaaaggcattgcacccaaattaaactaaataaaactagatatgtattatcaaaaatagtat |
338 |
Q |
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| T |
19140577 |
ttccatctttgaaatcaatttatatatgatcaaacatataaaa-acattgcacccaaattaaactaaataaaactagatatgtattatcaaaaatagtat |
19140479 |
T |
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| Q |
339 |
ttca |
342 |
Q |
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|||| |
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| T |
19140478 |
ttca |
19140475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 343
Target Start/End: Original strand, 19142485 - 19142616
Alignment:
| Q |
212 |
aaagtttaaaataaatggtcagtaatcattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaactaaataaaa |
311 |
Q |
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| T |
19142485 |
aaagtttaaaaggtatgatcagtagttattcaatctttgcaatcaattaaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaa |
19142584 |
T |
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| Q |
312 |
ctagatatgtattatcaaaaatagtatttcat |
343 |
Q |
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| T |
19142585 |
ctagatttgcattatcaaatatagtgtttcat |
19142616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 19138915 - 19138866
Alignment:
| Q |
49 |
atcaatttcttgaattagagttctcttcaaaggttacaactccccaattc |
98 |
Q |
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| T |
19138915 |
atcaattccttgaattagagttctcttcaaaggttacaacttcctaattc |
19138866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 19140717 - 19140675
Alignment:
| Q |
4 |
aataatgttacaccggttttatgatgattaacaaaactacatc |
46 |
Q |
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| T |
19140717 |
aataatgttccaccggttttatgatgattaacaaaattacatc |
19140675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 40293387 - 40293311
Alignment:
| Q |
238 |
cattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaactaaataaaacta |
314 |
Q |
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| T |
40293387 |
cattcaatctttgaaatcaatttatatatgatcaagatataaaaagtattgcacataaattaaacataataaaacta |
40293311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 1192866 - 1192708
Alignment:
| Q |
138 |
gttaatctatgatcccaattaaagcatcatttattcctagaatcacccgttctattaaacactttaactagatcaaagtttaaaataaatggtcagtaat |
237 |
Q |
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|||||||||| ||| |||| ||| ||||||||| ||||| | ||||||| ||| |||| ||||| |||||| ||||| || |||||| || | |
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| T |
1192866 |
gttaatctattatcacaatcaaacaatcatttatctctagactaacccgtttaattgaacaatttaattagatccaagtt------aattggtcaatagt |
1192773 |
T |
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| Q |
238 |
cattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaac |
302 |
Q |
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||||| |||||| ||||||||||||||||||||| | |||||| |||||||| ||| |||||| |
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|
| T |
1192772 |
cattcaatctttgaaatcaatttatatatgatcacaatataaaaaacattgcacacaacttaaac |
1192708 |
T |
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