View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15207_low_8 (Length: 232)
Name: NF15207_low_8
Description: NF15207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15207_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27824929 - 27824715
Alignment:
| Q |
1 |
gagattagtaagacaaaatcggaggatacttcacactaataatagtaaggttaaccnnnnnnn-ttagggcttaaatgtatataaaaattgtctctgaaa |
99 |
Q |
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| T |
27824929 |
gagattagtaagacaaaatcggaggatacttcacactaataatagtaaggttaaccaaaaaaaattagggcttaaatgtatataaaaattgtctctgaaa |
27824830 |
T |
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| Q |
100 |
gtttagattgggaggttgaacgatccatatataaaaacatacaaatacatcactctaaaatagataaagctatatatattaacttacatgtttgtcaatg |
199 |
Q |
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| T |
27824829 |
gtttagattgggaggttgaacgatccatatataaaaacatacaaatacatcactctaaaatagataaagctat--atattaacttacatgtttgtcaatg |
27824732 |
T |
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| Q |
200 |
taatctccccaaaactt |
216 |
Q |
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||||||||||||||||| |
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| T |
27824731 |
taatctccccaaaactt |
27824715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 27821772 - 27821734
Alignment:
| Q |
179 |
taacttacatgtttgtcaatgtaatctccccaaaacttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27821772 |
taacttacatgtttgtcaatgtaatctccccaaaacttg |
27821734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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