View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15208_high_1 (Length: 628)
Name: NF15208_high_1
Description: NF15208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15208_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 250 - 619
Target Start/End: Complemental strand, 19474296 - 19473927
Alignment:
| Q |
250 |
tagatgttaaatgagtttaaatctcattccacttacctaaggattacaactttgcgacacgtctttggtaagctattggctttaccgacttatcgttctt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19474296 |
tagatgttaaatgagtttaaatctcattccacttacctcataattgcaactttgcgacacgtctttggtaagctattggctttaccaacttatcgttctt |
19474197 |
T |
|
| Q |
350 |
tcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgtttatgtccgcttgttgatggttatggtgcactaggaat |
449 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474196 |
tcaaggggatgatctttatgtttggctgcgtcgtggtattgatggtcattctagatttctgtttatgtccgcttgttgatggttatggtgcactaggaat |
19474097 |
T |
|
| Q |
450 |
agcttgtgtacggaaaatgaggttgtgctcccccttttctattaagacgtgtacgaacaactatgctaatcttctggctaagtgcttcctcaagtagcat |
549 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
19474096 |
agcttgtgtacggaaaatgaggttgtactcccccttttctattaagacatgtacgaacaactatgctaatcttctggctaagtgtttcctcaagcagcat |
19473997 |
T |
|
| Q |
550 |
ctagttccactcatgtgagtgataaattggaacgataagggtggtaatggcatgattttgaatgatgatg |
619 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
19473996 |
ccagttccactcatgtgagtgataaattggaacgatgagggtggtaatggcatgattttgaatgttgatg |
19473927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19474538 - 19474315
Alignment:
| Q |
1 |
aatgttgatgaaaaagttagggaagaagttgagaatctaactttgtttaaataatgtactttaggtttagatagagacatttattagaatctaaaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19474538 |
aatgttgatgaaaaagttagggaagaagttgagaatctaactttgtttaaataatgtactttaggtttcgatagagacatttattagaatctaaaataac |
19474439 |
T |
|
| Q |
101 |
acgggtttggaacttaaataaattactttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttctccctctagaggaaaagagttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
19474438 |
acgggtttggaacttaaataaattactttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttccccgtctagaggaaaagagttg |
19474339 |
T |
|
| Q |
201 |
cacctagtactttgaattttaacc |
224 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
19474338 |
cacctagtattttgaattttaacc |
19474315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 25785853 - 25785932
Alignment:
| Q |
355 |
gggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgtttatgtccgcttgttgatggtta |
434 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||| ||||||| |||||| |
|
|
| T |
25785853 |
gggatgatctttatgtttggctgcgtcgtggtattgatggtaaatctagctttttgtttatgtcaacttgttggtggtta |
25785932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 345 - 598
Target Start/End: Complemental strand, 33172855 - 33172603
Alignment:
| Q |
345 |
ttctttcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgtttatgtccgcttgttgatggttatggtgcacta |
444 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| | ||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
33172855 |
ttctttcaaggggatgatctttatgttcggcttccgcgtggtattgatggccattttagatttctgtttatgtccgcttgttggtggttatggcgcgcta |
33172756 |
T |
|
| Q |
445 |
ggaatagcttgtgtacggaaaatgaggttgtgctcccccttttctattaagacgtgtacgaacaactatgctaatcttctggctaagtgcttcctcaagt |
544 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||| |||||||||||| | |||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
33172755 |
ggaatagcttgtgtatgacaaatgaggttgt-ctctcccttttctattcgaatgtgtacagacaactatgctaattttctggctaagtgcttcatcaagc |
33172657 |
T |
|
| Q |
545 |
agcatctagttccactcatgtgagtgataaattggaacgataagggtggtaatg |
598 |
Q |
| |
|
||||| | ||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
33172656 |
agcattcaattccactcatgcaagtgataaagtggaacgataagggtggtaatg |
33172603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 440 - 608
Target Start/End: Complemental strand, 25016604 - 25016437
Alignment:
| Q |
440 |
cactaggaatagcttgtgtacggaaaatgaggttgtgctcccccttttctattaagacgtgtacgaacaactatgctaatcttctggctaagtgcttcct |
539 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
25016604 |
cactaggaatagcttgtgtatggaaaatgaggttgtt-tcccccttttctattaggatgtgtacatacaactatgttaatcttctggctaagtgcttcct |
25016506 |
T |
|
| Q |
540 |
caagtagcatctagttccactcatgtgagtgataaattggaacgataagggtggtaatggcatgatttt |
608 |
Q |
| |
|
|||| | |||| |||| |||||||| | |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
25016505 |
caagcaacatccagtttcactcatgcgggtgataaagtggaacgacaagggtggtaatgacatgatttt |
25016437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 477 - 612
Target Start/End: Original strand, 3941633 - 3941768
Alignment:
| Q |
477 |
ctcccccttttctattaagacgtgtacgaacaactatgctaatcttctggctaagtgcttcctcaagtagcatctagttccactcatgtgagtgataaat |
576 |
Q |
| |
|
||||||| ||||||||| || |||||| | |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||| |
|
|
| T |
3941633 |
ctcccccctttctattaggatgtgtacagaaaactatgctaatcttctgcctaagtgcttcctcaagcagcatccagttccacttatgtgagtagtaaag |
3941732 |
T |
|
| Q |
577 |
tggaacgataagggtggtaatggcatgattttgaat |
612 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3941733 |
tggaacgataagggtggtaatgacatgattttgaat |
3941768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 3941511 - 3941631
Alignment:
| Q |
300 |
tttgcgacacgtctttggtaagctattggctttaccgacttatcgttctttcaaggggattatctttatgtttggctgc-atcgtggcattgatggtcat |
398 |
Q |
| |
|
|||||||| |||| |||| || |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| | |||| |||||||| ||| |
|
|
| T |
3941511 |
tttgcgactcgtccttggcaaactattggctttaccgacttatctttcttccaaaggaattatctttatgtttggctgcgtttgtggtattgatggccat |
3941610 |
T |
|
| Q |
399 |
tctagatttctgtttatgtcc |
419 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
3941611 |
tctagatttctttttatgtcc |
3941631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 612
Target Start/End: Complemental strand, 43156545 - 43156363
Alignment:
| Q |
429 |
tggttatggtgcactaggaatagcttgtgtacggaaaatgaggttgtgctcccccttttctattaagacgtgtacgaacaactatgctaatcttctggct |
528 |
Q |
| |
|
||||||||| || ||| ||||||||||||| || ||| |||||||| || ||||| |||| || | |||||| ||||||||| ||||||||||| | |
|
|
| T |
43156545 |
tggttatggcgcgttagaaatagcttgtgtatggcaaacgaggttgtt-tctcccttatctactagaatgtgtacatacaactatgttaatcttctggtt |
43156447 |
T |
|
| Q |
529 |
aagtgcttcctcaagtagcatctagttccactcatgtgagtgataaattggaacgataagggtggtaatggcatgattttgaat |
612 |
Q |
| |
|
||||| || ||||| | |||| | |||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43156446 |
aagtgtttattcaagcaacatccatttccactcgtgtgtgtgataaagtggaacaataagggtggtaatggcatgattttgaat |
43156363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University