View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15208_high_2 (Length: 530)
Name: NF15208_high_2
Description: NF15208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15208_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 175 - 515
Target Start/End: Complemental strand, 23932508 - 23932170
Alignment:
| Q |
175 |
ttgtttatttgtgcatgaagccattgggtaatatacatgcgaggcttacacgtattcactcgttatgcaagaatgttatagctggtactgccaagtatca |
274 |
Q |
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| T |
23932508 |
ttgttcatttgtgcatgaagccattgggtaatatacatgcgaggcttacacgtattcacttgtcatgcaagaatgttatagctcgtactgccaagtatca |
23932409 |
T |
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| Q |
275 |
accctagctcaattaattaaagtgaccaccnnnnnnngacaaagatcttgaagagatgcttgaaattaatattttaaagaaaacataaaatttcaataaa |
374 |
Q |
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| T |
23932408 |
accctagctcaattaattaaagtgaccacc-gaaaaagacaaagatctttaagatatgtttgaaataaatatttaaaagaaaaca-aaaatttcaataaa |
23932311 |
T |
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| Q |
375 |
atatcttttagtttacgnnnnnnntattttcaattttctgaaacgggtttaannnnnnnncattggcactccctttaaatcacaccattttatctctctt |
474 |
Q |
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| T |
23932310 |
gtagtttttaaattacgaaaaaattattgtcaactttctgaaaccggtttggatatttttcattcacactcactttaaattacaccattttatctctctt |
23932211 |
T |
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| Q |
475 |
tttctattctagctagcaaaagaaggggtgatggaagaaat |
515 |
Q |
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| T |
23932210 |
tttctattctagctagcaaaagaaggggtgatggaagaaat |
23932170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 23938078 - 23938020
Alignment:
| Q |
216 |
aggcttacacgtattcactcgttatgcaagaatgttatagctggtactgccaagtatca |
274 |
Q |
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| T |
23938078 |
aggcttacacgtatttactagtcatgcaagcatggtatagctagttctgccaagtatca |
23938020 |
T |
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