View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15208_high_5 (Length: 352)
Name: NF15208_high_5
Description: NF15208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15208_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 5117026 - 5116691
Alignment:
| Q |
17 |
catgtataccatgcttatttgtagtatgtcaattataattatttcgttttgtggtatttgatattcacaggttaacaccaaagaagccataggtttctat |
116 |
Q |
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| T |
5117026 |
catgtataccatgcttatttgtagtatgtcaattataattacttcgttttgtggtatttgatattcacaggttaacaccaaagaagccataggtttctat |
5116927 |
T |
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| Q |
117 |
atctcaagtgagataatttcactatgcttgtcaaatatgcaaaacggcaatgaattgacaaaaattgttagtttctctattcttattcttttgctagttt |
216 |
Q |
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| T |
5116926 |
ctctcaagtgagataatttcactatgcttgtcaaatatgcaaaacggcaatgaattgacaaaaattgttagtttctctattcttattgtttttccagttt |
5116827 |
T |
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| Q |
217 |
attagtataaaatattttgacatccatttttgttaccaatatacctgctaatgaaagttgtatatctccacaggttgcaacatttatacttctgaaaatt |
316 |
Q |
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| T |
5116826 |
attagtataaagtattttgacattcatttttgttaccaatatacctgctaatgaaagttgtatatctccacaggttgcaacatttataattctgaaaatt |
5116727 |
T |
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| Q |
317 |
atattagacgatgatggtttggctcgtgtctgtgct |
352 |
Q |
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| T |
5116726 |
atattagacgatgatggtttggctcgtgtttgtgct |
5116691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 9518972 - 9519133
Alignment:
| Q |
47 |
aattataattatttcgttttgtggtatttgatattcacaggttaacaccaaagaagccataggtttctatatctcaagtgagataatttcactatgcttg |
146 |
Q |
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| T |
9518972 |
aattataataatttccttctgtcgtacatgatagtcacaggttaacaccaaagaaagcatagattttcttcttagaagtgagataattccactatgccta |
9519071 |
T |
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| Q |
147 |
tcaaatatgcaaaacggcaatgaattgacaaaaattgttagtttctctattcttattctttt |
208 |
Q |
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| T |
9519072 |
tgcaatatggaaatcggcaaagaattatccaaaactgttagtttctctattcttattgtttt |
9519133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 24127766 - 24127637
Alignment:
| Q |
74 |
ttgatattcacaggttaacaccaaagaagccataggtttctatatctcaagtgagataatttcactatgcttgtcaaatatgcaaaacggcaatgaattg |
173 |
Q |
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||||||||||||||||||||||||||||| | | |||| | ||| | ||||||||||||| |||| |||||| || ||| | | |||||||||| | |
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| T |
24127766 |
ttgatattcacaggttaacaccaaagaagtcttgggttaccttattttaagtgagataattccactctgcttgagcaacatggagatcggcaatgaaata |
24127667 |
T |
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| Q |
174 |
acaaaaattgttagtttctctattcttatt |
203 |
Q |
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| T |
24127666 |
tcaaaaactgttagtttctctatttttatt |
24127637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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