View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15208_low_1 (Length: 763)

Name: NF15208_low_1
Description: NF15208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15208_low_1
NF15208_low_1
[»] chr1 (9 HSPs)
chr1 (19-518)||(4160616-4161117)
chr1 (542-761)||(4160379-4160598)
chr1 (636-752)||(12774948-12775064)
chr1 (637-761)||(28496106-28496230)
chr1 (637-755)||(12804511-12804629)
chr1 (637-755)||(36989348-36989466)
chr1 (207-249)||(50786107-50786149)
chr1 (636-761)||(42287119-42287244)
chr1 (636-725)||(50788818-50788907)
[»] chr8 (2 HSPs)
chr8 (636-761)||(5788722-5788847)
chr8 (651-755)||(33186743-33186847)
[»] chr4 (2 HSPs)
chr4 (636-756)||(30518147-30518267)
chr4 (655-761)||(22085524-22085630)
[»] chr7 (1 HSPs)
chr7 (636-761)||(40749392-40749517)
[»] chr2 (4 HSPs)
chr2 (637-761)||(40040791-40040915)
chr2 (637-725)||(42898336-42898424)
chr2 (635-761)||(38895855-38895981)
chr2 (207-241)||(42898918-42898952)


Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 4161117 - 4160616
Alignment:
Q  19 tagggttagggttttgaaaatggttcaaatgggctgggagtaaccataatggaatttctggtcttaaattgaagtcttgttccttttttagtgatagtgg 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4161117 tagggttagggttttgaaaatggttcaaatgggttgggagtaaccataatggaatttctggtcttaaattgaagtcttgttccttttttagtgatagtgg 4161018  T
Q  119 ttgaaaaccatggctttgatgaaattgcgagtgagaagagaatagagggttcactgctgaaattgatgcactctcttgtgataaaacgtcacagaaggct 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4161017 ttgaaaaccatggctttgatgaaattgggagtgagaagagaatagagggttcactgctgaaattgatgcactctcctgtgataaaacgtcacagaaggct 4160918  T
Q  219 ctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatatacatcatattattatttaattaatctcaaatatttattgaaaaaata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160917 ctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatatacatcatattattatttaattaatctcaaatatttattgaaaaaata 4160818  T
Q  319 catgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcattatatttgaattcgagtactctc---aaactattcatcttagtttgg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  4160817 catgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcattatatttgaattcgagtactctcaataaactattcatcttggtttgg 4160718  T
Q  416 ataatgaaagattaccatatggacagttttgaatattgatttgtatgtcacattctatgaactaaaaatactgtttaagcacacttttttacctttttac 515  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4160717 ataatgaaagattaccatatggaccgttttgaatattgatttgtatgtcacattctatgaactaaaaatactgtttaagcacac-tttttacctttttac 4160619  T
Q  516 gta 518  Q
    |||    
T  4160618 gta 4160616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 542 - 761
Target Start/End: Complemental strand, 4160598 - 4160379
Alignment:
Q  542 ttttggattttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 641  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160598 ttttggaatttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 4160499  T
Q  642 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160498 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 4160399  T
Q  742 tcacacttccacttcatctc 761  Q
    ||||||||||||||| ||||    
T  4160398 tcacacttccacttcttctc 4160379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 636 - 752
Target Start/End: Complemental strand, 12775064 - 12774948
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 735  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| |||| ||||||||||||||||| || ||||| |||||    ||||||    
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaa 12774965  T
Q  736 catttctcacacttcca 752  Q
    || || |||||||||||    
T  12774964 cacttttcacacttcca 12774948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 761
Target Start/End: Original strand, 28496106 - 28496230
Alignment:
Q  637 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 736  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  737 atttctcacacttccacttcatctc 761  Q
    |||| ||||| ||||||||| ||||    
T  28496206 atttttcacatttccacttcttctc 28496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 637 - 755
Target Start/End: Original strand, 12804511 - 12804629
Alignment:
Q  637 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 736  Q
    |||||||||||||| || |||||||||||  |||||||  |||| |||||| | || ||||||||||||||||| || ||||| ||||||   |||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  737 atttctcacacttccactt 755  Q
    | || ||||| ||||||||    
T  12804611 acttttcacatttccactt 12804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 637 - 755
Target Start/End: Complemental strand, 36989466 - 36989348
Alignment:
Q  637 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 736  Q
    ||||| || |||| ||||||||||||||| || || ||  | || ||||| ||||||||||||||||||||||| || ||||| ||||||   |||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  737 atttctcacacttccactt 755  Q
    | || ||||| ||||||||    
T  36989366 acttatcacatttccactt 36989348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 50786107 - 50786149
Alignment:
Q  207 tcacagaaggctctgtgagtgatgaaactgtcccttctgcaat 249  Q
    |||||||||||||||||||| ||||||||||| || |||||||    
T  50786107 tcacagaaggctctgtgagttatgaaactgtctctcctgcaat 50786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 761
Target Start/End: Complemental strand, 42287244 - 42287119
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 735  Q
    |||||| ||||||||||| ||||| |||||  |||| ||| |||| |||||| | || ||||| |||||||| || || ||||| ||||||   || ||     
T  42287244 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgag 42287145  T
Q  736 catttctcacacttccacttcatctc 761  Q
    ||||| ||||| ||||||||| ||||    
T  42287144 catttttcacatttccacttcttctc 42287119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 725
Target Start/End: Original strand, 50788818 - 50788907
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcata 725  Q
    |||||| |||||||| || |||||||||||| |||| ||| | ||||||||| | || ||||| || |||||||| || ||||| |||||    
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcata 50788907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 636 - 761
Target Start/End: Original strand, 5788722 - 5788847
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 735  Q
    ||||||||||||||||||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||||||| || ||||| ||||||   || |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  736 catttctcacacttccacttcatctc 761  Q
    || || ||||| ||||||||| ||||    
T  5788822 cacttttcacatttccacttcttctc 5788847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 651 - 755
Target Start/End: Complemental strand, 33186847 - 33186743
Alignment:
Q  651 ggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttc 750  Q
    ||||||||| ||||| ||||||||| |||  ||||||| ||| || |||||||||||||| || ||||| ||||||   ||||||||||||||||| |||    
T  33186847 ggttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttc 33186748  T
Q  751 cactt 755  Q
    |||||    
T  33186747 cactt 33186743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 636 - 756
Target Start/End: Original strand, 30518147 - 30518267
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 735  Q
    ||||||||| ||||  |||||||||||||| || || ||| |||| |||||  |||| || |||||||||||||| |||||||| ||||| ||||| ||     
T  30518147 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 30518246  T
Q  736 catttctcacacttccacttc 756  Q
    || ||||||||||||||||||    
T  30518247 cacttctcacacttccacttc 30518267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 761
Target Start/End: Original strand, 22085524 - 22085630
Alignment:
Q  655 ccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccact 754  Q
    ||||| ||||| || |||||| |||| |||||||| |||  ||||||||||||||| || ||||||||||||   || ||||| || |||||||||||||    
T  22085524 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 22085623  T
Q  755 tcatctc 761  Q
    || ||||    
T  22085624 tcttctc 22085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 761
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  636 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 735  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||| |||||| |||| |  |||||||||||||| || || |||||||||   || |||    
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  736 catttctcacacttccacttcatctc 761  Q
    || || ||||||||||| ||| ||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 637 - 761
Target Start/End: Complemental strand, 40040915 - 40040791
Alignment:
Q  637 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 736  Q
    ||||| ||||| || || ||||| |||||  | |||||||||||||||||||| ||   |||||| |||||||| || ||||||||||||   |||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  737 atttctcacacttccacttcatctc 761  Q
    | || ||||||||||||||| ||||    
T  40040815 acttatcacacttccacttcttctc 40040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 637 - 725
Target Start/End: Complemental strand, 42898424 - 42898336
Alignment:
Q  637 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcata 725  Q
    |||||||||||||||||||||||||||||  | || ||| | ||||||||  ||||||| ||||||||||| || || |||||||||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcata 42898336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 761
Target Start/End: Original strand, 38895855 - 38895981
Alignment:
Q  635 cttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttaga 734  Q
    |||||||||| ||||  || ||||| ||||| || || ||| |||| |||||| | || || || |||||||||||||| ||||| |||||   ||| ||    
T  38895855 cttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttga 38895954  T
Q  735 acatttctcacacttccacttcatctc 761  Q
     || |||||||||||||||||| ||||    
T  38895955 gcacttctcacacttccacttcttctc 38895981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 42898952 - 42898918
Alignment:
Q  207 tcacagaaggctctgtgagtgatgaaactgtccct 241  Q
    |||||||||||||||||||| ||||||||||||||    
T  42898952 tcacagaaggctctgtgagttatgaaactgtccct 42898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University