View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15209_low_2 (Length: 295)
Name: NF15209_low_2
Description: NF15209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15209_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 103 - 282
Target Start/End: Original strand, 34714346 - 34714522
Alignment:
| Q |
103 |
ccaatgtgtaaaacaactacacatgtattgctgggtatcaaatgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagag |
202 |
Q |
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| T |
34714346 |
ccaatgtgtaaaacaactacacatgtatagttgggtttaaaatgtgagtggttaagtcccacatcacatatgaatgggtaaaatattggatatagaagag |
34714445 |
T |
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| Q |
203 |
agatgacccacattacccaattctttaatattttggttatgatgatgtgtcactctcttatggttgtggagcattgatat |
282 |
Q |
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| T |
34714446 |
agatgacccacattacccaattctttaatattttggtt---atgatgtgtcactctcttgtggtcgtggagcattgatat |
34714522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 34714255 - 34714284
Alignment:
| Q |
18 |
gcactcaggcccggttataggaccccactc |
47 |
Q |
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| T |
34714255 |
gcactcaggcccggttataggaccccactc |
34714284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 11615730 - 11615805
Alignment:
| Q |
134 |
tgggtatcaaatgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagagagatgac |
209 |
Q |
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| T |
11615730 |
tgggtttcaaatgtgagtggttaagtctcacatcacttatgaacagataaaatgttggatatataaaagagatgac |
11615805 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 11806433 - 11806493
Alignment:
| Q |
145 |
tgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagagaga |
205 |
Q |
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| T |
11806433 |
tgtgagtgattaagtcccacattgtatatgaatgtgtaaaatattggatatataagagaga |
11806493 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 23270925 - 23270866
Alignment:
| Q |
142 |
aaatgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaaga |
201 |
Q |
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| T |
23270925 |
aaatgtgagtggttaagtcccacattgtttatgaatgtgtaaaatattggatatacaaga |
23270866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 28978994 - 28979069
Alignment:
| Q |
134 |
tgggtatcaaatgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagagagatgac |
209 |
Q |
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| T |
28978994 |
tgggtttcaagtgtgagtggttaagtctcacactatttatgaatgtgtaaaatattggatatataagagaggtgac |
28979069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 33730202 - 33730138
Alignment:
| Q |
148 |
gagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagagagatgaccca |
212 |
Q |
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| T |
33730202 |
gagtggttaagtcccacatcgactatgaatgggttaaatgttggatataaaagagaggtgaccca |
33730138 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 11199928 - 11199992
Alignment:
| Q |
145 |
tgtgagtggttaagtcccacatcatatatgaataggtaaaatattggttatagaagagagatgac |
209 |
Q |
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| T |
11199928 |
tgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgac |
11199992 |
T |
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