View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15209_low_3 (Length: 295)
Name: NF15209_low_3
Description: NF15209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15209_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 292136 - 291870
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
292136 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
292037 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
292036 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctggatgaaatgatttcacatatgcaacaactccagca |
291937 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
291936 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
291870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 9506964 - 9506698
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9506964 |
aatcttccttagtgatgtcataaacaagtccagggtcaatagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
9506865 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
9506864 |
agtacaattaaccggttttgtcgtggtcatgatggcagatttgatagatgctggcgaccaatctggatgaaatgatttcacatatgcagcaactccagca |
9506765 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9506764 |
acgtgaggacatgccatagaggttccagattttatgttgtatttgacatgtcttttgtcatttatat |
9506698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 244
Target Start/End: Complemental strand, 268913 - 268696
Alignment:
| Q |
27 |
tgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattataagtaccattaac |
126 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || |
|
|
| T |
268913 |
tgatgtcataaacaagtccaggatgaacagcttgttgtgggttgacattcccagatccataagcaaactcacccaccaaatcatcataagtacctttcac |
268814 |
T |
|
| Q |
127 |
cggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagcaacgtgaggacag |
226 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||| || |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
268813 |
tggttccgcagtggtcatgatggcagatttgatagctgcaggtgaccaatctggatgaaatgatctcacatatgcaacaactccagcaacgtggggacat |
268714 |
T |
|
| Q |
227 |
gccatagaggttccagat |
244 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
268713 |
gacatcgaggttccagat |
268696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 647008 - 647225
Alignment:
| Q |
27 |
tgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattataagtaccattaac |
126 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || |
|
|
| T |
647008 |
tgatgtcataaacaagtccaggatgaacagcttgttgtgggttgacattcccagatccataagcaaactcacccaccaaatcatcataagtacctttcac |
647107 |
T |
|
| Q |
127 |
cggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagcaacgtgaggacag |
226 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||| || |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
647108 |
tggttccgcagtggtcatgatggcagatttgatagctgcaggtgaccaatctggatgaaatgatctcacatatgcaacaactccagcaacgtggggacat |
647207 |
T |
|
| Q |
227 |
gccatagaggttccagat |
244 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
647208 |
gacatcgaggttccagat |
647225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 832743 - 832960
Alignment:
| Q |
27 |
tgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattataagtaccattaac |
126 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || |
|
|
| T |
832743 |
tgatgtcataaacaagtccaggatgaacagcttgttgtgggttgacattcccagatccataagcaaactcacccaccaaatcatcataagtacctttcac |
832842 |
T |
|
| Q |
127 |
cggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagcaacgtgaggacag |
226 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||| || |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
832843 |
tggttccgcagtggtcatgatggcagatttgatagctgcaggtgaccaatctggatgaaatgatctcacatatgcaacaactccagcaacgtggggacat |
832942 |
T |
|
| Q |
227 |
gccatagaggttccagat |
244 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
832943 |
gacatcgaggttccagat |
832960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 12860403 - 12860669
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
12860403 |
aatcttccttagtgatgtcataaacaagtccagggtcagcaacttgttgtggattgacatttccagatccataagcaaactcacctaccatatcattata |
12860502 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| ||| || |||||||| | |||||||||||||||||||| | ||| |||||| |
|
|
| T |
12860503 |
agtaccattcaccggtttcgccgtggtcatgatggcagatttgatagctgcgggtgaccaatcgggatgaaatgatttcacatatgtagcaatgccagca |
12860602 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||| |||||||||| |||||||| ||| |||||| |
|
|
| T |
12860603 |
acatggggacatgccatagaggttccagattctatgttgtatttgacatgtcttttatcacttatat |
12860669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 19823724 - 19823464
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| || ||||||| |||||||| |||||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
19823724 |
aatcctccttagtgatgtcataaacaagcccagggttaatggcttgttgtggattgatattcccagatccataagcaaactctccagccaaatcatcata |
19823625 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|| ||| || || | | || || |||||||||||||||||||||| ||| || ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
19823624 |
aggacctttcactagggtagcagttgtcatgatggcagatttgatagctgcaggtgaccaatttggatgaaatgatttcacatatgcaacaactccagca |
19823525 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcat |
275 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||| ||||||| || ||||||||||||| |
|
|
| T |
19823524 |
acatggggacatgccatagaggttccagattctatgttgtatttaacatgtcttttgtcat |
19823464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 19888813 - 19888554
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
19888813 |
aatcctccttagtgatgtcataaacaagtccagggttaagggcttgttgtggattgatattcccagatccataagcaaactctccagccaaatcatcata |
19888714 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|| ||| || || | || || || |||||||||||||||||||||| ||| || ||||||| || |||||||||||||||||||||| ||||||||||| |
|
|
| T |
19888713 |
aggacctttcactaggttagcggttgtcatgatggcagatttgatagctgcaggtgaccaatttggatgaaatgatttcacatatgcagcaactccagca |
19888614 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtca |
274 |
Q |
| |
|
|| || ||||| | |||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
19888613 |
acatgcggacatgacatagaggttccagattctatgttgtatttaacacgtcttttgtca |
19888554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 2294733 - 2294485
Alignment:
| Q |
26 |
gtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattataagtaccattaa |
125 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||| || | |
|
|
| T |
2294733 |
gtgatgtcataaacaagtccagggtgaagagcttgttgtggattgatattcccagatccataagcaaactcacctgctaaatcatcataactacctttca |
2294634 |
T |
|
| Q |
126 |
ccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagcaacgtgaggaca |
225 |
Q |
| |
|
| ||||| || || |||||||||||||||||||||| ||| || ||||||||| |||||| ||||| || ||||||||||||||||| || | ||||| |
|
|
| T |
2294633 |
ctggtttagcagttgtcatgatggcagatttgatagctgcaggtgaccaatctttatgaaaagatttaacgtatgcaacaactccagcgacatagggaca |
2294534 |
T |
|
| Q |
226 |
ggccatagaggttccagattctatgctgtatttgacctgtcttttgtca |
274 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || |||||||||| |
|
|
| T |
2294533 |
tgccatagaggttccagataatatggtgtatttggtctttcttttgtca |
2294485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 17778114 - 17778380
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
17778114 |
aatcttgcttagtaatatcataaacaagtccagggtgaatggcttgttgtggattgatattcccagatccataagcaaactcaccagccaaatcatcata |
17778213 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
| ||| || || || || | || ||||||||||||||||| |||| ||| || |||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
17778214 |
atgacctttcactggcttagttgttgtcatgatggcagatttaatagctgcaggtgaccaatcgggatgaaatgatttcacatacgcaacaactccagca |
17778313 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
|| || ||||| | | |||| |||||||| | ||| |||| || ||||||||||||||| |||||| |
|
|
| T |
17778314 |
acatggggacaagacgtagaagttccagaattaatggtgtacttaacctgtcttttgtcaattatat |
17778380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 19079415 - 19079681
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
19079415 |
aatcttgcttagtaatatcataaacaagtccagggtgaatggcttgttgtggattgatattcccagatccataagcaaactcaccagccaaatcatcata |
19079514 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
| ||| || || || || | || ||||||||||||||||| |||| ||| || |||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
19079515 |
atgacctttcactggcttagttgttgtcatgatggcagatttaatagctgcaggtgaccaatcgggatgaaatgatttcacatacgcaacaactccagca |
19079614 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
|| || ||||| | | |||| |||||||| | ||| |||| || ||||||||||||||| |||||| |
|
|
| T |
19079615 |
acatggggacaagacgtagaagttccagaattaatggtgtacttaacctgtcttttgtcaattatat |
19079681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 19388631 - 19388372
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
19388631 |
aatcttgcttagtaatgtcataaacaagtccaggctcaatggcttgttttggattgatattccctgatccataagcaaactcacctaccaaatcatcata |
19388532 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|||||| || || ||| | | || |||||||| ||||||||||||| ||| || |||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
19388531 |
agtacctttcactggtgtagtagttgtcatgatagcagatttgatagctgcaggtgaccaatctggatgaaatgatttcacatatccaacaactccagca |
19388432 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtca |
274 |
Q |
| |
|
| ||||| || | |||||||||||||||| |||| |||| || |||| ||| |||||| |
|
|
| T |
19388431 |
gcatgagggcaagacatagaggttccagataatatggtgtacttaacctttctattgtca |
19388372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 18599843 - 18599614
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
18599843 |
aatcttgcttagtaatgtcataaacaagtccagggtgaatggcttgttttggattgatattccctgatccataagcaaactcacctacaaaatcatcata |
18599744 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|||||| || || ||| | || || |||||||| ||||||||||||| || || ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
18599743 |
agtacctttcactggtgtagcagttgtcatgatagcagatttgatagctgtaggtgaccaatctagatgaaatgatttcacatatccaacaactccagca |
18599644 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagat |
244 |
Q |
| |
|
|| ||||| || | | |||||||||||||| |
|
|
| T |
18599643 |
acatgagggcaagacgtagaggttccagat |
18599614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 18605342 - 18605083
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||| || |||||||||||||||| ||| || ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
18605342 |
aatcttgcttagtaatgtcataaacaagtacagggtgaatggcttgttttggattgatatttcctgatccataagcaaactcacctgccatatcatcata |
18605243 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
||||| || || ||| | || || |||||||| ||||||||||||| ||| || |||||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
18605242 |
agtacgtttcactggtgtagcagttgtcatgatagcagatttgatagctgcaggtgaccaatctggatgaaatgatttcacatatccagcaactccagca |
18605143 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtca |
274 |
Q |
| |
|
| | ||| || | ||||||||||| |||| |||| |||| || |||| |||||||||| |
|
|
| T |
18605142 |
gcatcagggcaagacatagaggttctagataatatgttgtagttaacctttcttttgtca |
18605083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 29561150 - 29560895
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| ||| || || |||||||||||||| ||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29561150 |
aatcttgcttcgtaatatcataaacaagtccggggggaatggcttgttgtggattgatattcccagatccataagcaaactcacctgccaaatcatcata |
29561051 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
| ||| ||||| || || | || ||||||||||||||||||| || ||| || |||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
29561050 |
atgacctttaactggcttagtggttgtcatgatggcagatttgagagctgcaggtgaccaatcaggatgaaatgatttcacatatgcaacaataccagca |
29560951 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtctttt |
270 |
Q |
| |
|
|| |||||||| | |||||| |||||| || || ||||||| ||||||||||| |
|
|
| T |
29560950 |
acatgaggacatgacatagaagttccaaataaaatattgtatttaacctgtctttt |
29560895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 164698 - 164941
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||||||| ||||| |||| ||||| ||| |
|
|
| T |
164698 |
aatcttgcttagtgatgtcataaacaagtccagggtgaacggcttgttgtggattgatattaccagatccataagcaaattcaccagccatatcatcata |
164797 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
||||| || | | | | || || |||||||| || ||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
164798 |
agtacttttcattgttgtagcagttgtcatgatagcggattttatagatgcaggtgaccaatctggatgaaatgatttcacatatgcaacaactccagca |
164897 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtattt |
258 |
Q |
| |
|
| ||||| || |||||||||||||||||| |||| ||||||| |
|
|
| T |
164898 |
gcatgagggcatgccatagaggttccagataatatgttgtattt |
164941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 139298 - 139564
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||||| |||||||| ||| ||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
139298 |
aatcttgcttagtgatgtcataaacaagtccagggtgaagggcttgttgtggattgatattaccagatccataagcaaattcaccagccaaatcatcata |
139397 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|||||| || | | | | || || |||||||| || ||||| |||| ||| || |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
139398 |
agtacctttcattgttgtagcagttgtcatgatagcggattttatagctgcaggtgaccaatctggatgaaatgatttcacatatgcagcaactccagcg |
139497 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtatttgacctgtcttttgtcatttatat |
281 |
Q |
| |
|
| ||||| || |||||||||||||||||| |||| ||||||| | || ||| || |||||||||| |
|
|
| T |
139498 |
gcatgagggcatgccatagaggttccagataatatgttgtatttaaactttctcttatcatttatat |
139564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 18214922 - 18214679
Alignment:
| Q |
15 |
aatcttccttagtgatgtcataaacaagtccagggtcaacagcttgttttggattgacattcccagatccataagcaaactcacctgccaaatcattata |
114 |
Q |
| |
|
|||||| ||| || |||||||||| ||||||||||| || ||||||| |||||||| |||||| || ||||||||||||||||| ||||||||| ||| |
|
|
| T |
18214922 |
aatctttctttgtaatgtcataaataagtccagggtgaatggcttgttgtggattgatattccccgacccataagcaaactcaccaaccaaatcatcata |
18214823 |
T |
|
| Q |
115 |
agtaccattaaccggttttgccgtggtcatgatggcagatttgatagatgctggcgaccaatctgaatgaaatgatttcacatatgcaacaactccagca |
214 |
Q |
| |
|
|||||| || | ||| | || || |||||||| |||||||| |||| ||| || |||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18214822 |
agtacctttcattggtgtagctgttgtcatgatagcagattttatagctgcaggtgaccaatcaggatgaaatgacttcacatatgcaacaactccagca |
18214723 |
T |
|
| Q |
215 |
acgtgaggacaggccatagaggttccagattctatgctgtattt |
258 |
Q |
| |
|
|| ||||| || |||||||||||||| ||| |||| ||||||| |
|
|
| T |
18214722 |
acatgagggcatgccatagaggttccggataatatgttgtattt |
18214679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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