View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_high_13 (Length: 379)

Name: NF1520_high_13
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_high_13
NF1520_high_13
[»] chr5 (2 HSPs)
chr5 (14-163)||(23087136-23087288)
chr5 (214-364)||(23086974-23087124)
[»] chr6 (3 HSPs)
chr6 (241-364)||(19746422-19746545)
chr6 (232-363)||(5979241-5979372)
chr6 (241-364)||(34861623-34861746)
[»] chr3 (1 HSPs)
chr3 (223-363)||(36340329-36340469)
[»] chr7 (2 HSPs)
chr7 (63-128)||(24022785-24022849)
chr7 (244-289)||(22524938-22524983)
[»] chr8 (2 HSPs)
chr8 (92-142)||(11338232-11338281)
chr8 (82-142)||(11356785-11356844)
[»] scaffold0097 (1 HSPs)
scaffold0097 (245-286)||(16131-16172)
[»] chr2 (1 HSPs)
chr2 (245-286)||(20712292-20712333)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 23087288 - 23087136
Alignment:
Q  14 atatctccaatttcattatcatcatatac---catacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat 110  Q
    ||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23087288 atatctccaatttcattatcatcatctactaccatacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat 23087189  T
Q  111 tagtctagaagtaaaacagcaaaacataaaacttacaattaaacaacaaaaca 163  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23087188 tagtctagaagtaatacagcaaaacataaaacttacaattaaacaacaaaaca 23087136  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 23087124 - 23086974
Alignment:
Q  214 gtaaactttaaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgt 313  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  23087124 gtaaattttaaaacttgtaaatggaataagagaacttacttccaacaagtcgaaaccaagctttcaacataatccatggcagaaaaccaacacagtttgt 23087025  T
Q  314 tggaaattctaattctttctactctctcgtctctccgattatagataattg 364  Q
    |||||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  23087024 tggaaattttaattctctctactcgctcatctctccgattatagataattg 23086974  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 19746422 - 19746545
Alignment:
Q  241 aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct 340  Q
    ||||||||||||||||||  |||||||| |||||||||  |||| ||||| | ||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  19746422 aagagaacttacttccaatgagtcgaaatcaagctttcagcatagtccattgcagaaaaccaacacagtttgctggaaattttaactctctctactctct 19746521  T
Q  341 cgtctctccgattatagataattg 364  Q
      |||||| |||||||||||||||    
T  19746522 tatctctcagattatagataattg 19746545  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 363
Target Start/End: Complemental strand, 5979372 - 5979241
Alignment:
Q  232 aaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattcttt 331  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||| |  ||||| ||||  || |||||||  | |||||||||||||| |||||| |    
T  5979372 aaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggcggagaaccaacttattttgttggaaattccaattctct 5979273  T
Q  332 ctactctctcgtctctccgattatagataatt 363  Q
    |||||||||  |||||||||||||||||||||    
T  5979272 ctactctcttatctctccgattatagataatt 5979241  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 34861623 - 34861746
Alignment:
Q  241 aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct 340  Q
    ||||||||||||||||||  ||||| ||| |||||||| || |||||||||| ||| ||||||   | || |||||||||||||  ||| ||||||||||    
T  34861623 aagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggcagagaaccaatgaatttcgttggaaattctagctctatctactctct 34861722  T
Q  341 cgtctctccgattatagataattg 364  Q
      || |||  ||||||||||||||    
T  34861723 tatccctcttattatagataattg 34861746  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 36340469 - 36340329
Alignment:
Q  223 aaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattc 322  Q
    |||| ||||||||  || |||||||||||||||||||  ||||||||||||||||| |||||||| | || |||  |||| || | || |||||||||||    
T  36340469 aaaaattgtaaatcttagaagagaacttacttccaacgtgtcgaaaccaagctttcaacataatcaaaggcagaggaccagcatatttcgttggaaattc 36340370  T
Q  323 taattctttctactctctcgtctctccgattatagataatt 363  Q
    || || | ||||||||||  |||||| ||||||| ||||||    
T  36340369 tagttttctctactctcttatctctctgattatatataatt 36340329  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 24022849 - 24022785
Alignment:
Q  63 atgtgcttggagtcagatttgcagatctgtaattcaagaaatatccattagtctagaagtaaaaca 128  Q
    |||||||||||||  |  ||||||| || |||||||| ||||||||||||||||||||||||||||    
T  24022849 atgtgcttggagttggtcttgcagacctataattcaa-aaatatccattagtctagaagtaaaaca 24022785  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 22524938 - 22524983
Alignment:
Q  244 agaacttacttccaacaagtcgaaaccaagctttccacataatcca 289  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  22524938 agaacttactttcaagaagttgaaaccaagctttcaacataatcca 22524983  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 11338232 - 11338281
Alignment:
Q  92 taattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac 142  Q
    |||||||| |||||||||| || |||||||||||||| |||||||||||||    
T  11338232 taattcaa-aaatatccataagactagaagtaaaacaacaaaacataaaac 11338281  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 11356785 - 11356844
Alignment:
Q  82 tgcagatctgtaattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac 142  Q
    |||||| || |||||||| ||||||| |||||  ||||||||||||| |||||||||||||    
T  11356785 tgcagacctataattcaa-aaatatcaattaggttagaagtaaaacaacaaaacataaaac 11356844  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 16131 - 16172
Alignment:
Q  245 gaacttacttccaacaagtcgaaaccaagctttccacataat 286  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  16131 gaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 20712292 - 20712333
Alignment:
Q  245 gaacttacttccaacaagtcgaaaccaagctttccacataat 286  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  20712292 gaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

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