View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1520_high_17 (Length: 311)
Name: NF1520_high_17
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 10051384 - 10051193
Alignment:
| Q |
1 |
ggaatgagccagagccacattctattgtttgaatttattaaaaagtagtaatgaataaaatggagtgtgatggaattcattccgttcaataccacttctt |
100 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
10051384 |
ggaatgagacagagccatattttattatttgaatttgttaaaaagtagtaatgaatgaaatggagtgtgatggaactcattcagtccaataccacttctt |
10051285 |
T |
|
| Q |
101 |
taacaaagttttcaattaccctcaacttgagggtgtatccaatagaatagaacaattcataatacaattacaactttgttcctatctttttt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10051284 |
taacaaagttttcaattaccctcaacttgaaggtgtatccaatagaatagaacaattgataatacaattacaactttgttcctatctttttt |
10051193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 10051169 - 10051089
Alignment:
| Q |
185 |
tcttttttgttcctcttcatcgtttcttattcttctagctctcaaattatacggctatatgtgttattttgccttgttttg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10051169 |
tcttttttgttcctcttcatcgtttcttattcttctagctctcaaattatacggctatatgtgttattttgccttgttttg |
10051089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 4292722 - 4292601
Alignment:
| Q |
59 |
aatggagtgtgatggaattcattccgttcaataccacttctttaacaaagttttcaattaccctcaacttgagggtgtatccaatagaatagaaca-att |
157 |
Q |
| |
|
||||| ||||||||||| ||||||| | |||||||||| |||||| ||||||| ||| ||||||| || | ||||||||| ||||| |||| ||| |
|
|
| T |
4292722 |
aatggtgtgtgatggaactcattccatccaataccactattttaac-tagttttccattcccctcaattt----gggtatccaatggaatataacacatt |
4292628 |
T |
|
| Q |
158 |
cataatacaattacaactttgttccta |
184 |
Q |
| |
|
||||||||||||||| ||||| |||| |
|
|
| T |
4292627 |
aataatacaattacaattttgtcccta |
4292601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 50859214 - 50859250
Alignment:
| Q |
59 |
aatggagtgtgatggaattcattccgttcaataccac |
95 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
50859214 |
aatggagtgtgatggaattcattccatccaataccac |
50859250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 2777944 - 2777908
Alignment:
| Q |
264 |
tgatattgattgagattaagaaggtaaaagagaattg |
300 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
2777944 |
tgatatcgattgagattaagaagataaaagagaattg |
2777908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University