View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_high_20 (Length: 278)
Name: NF1520_high_20
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 9440890 - 9440633
Alignment:
| Q |
1 |
gtaatttcaatattgtggacttttagatcgtatggttcacttcatggagaaaaagaaaagtcttttaaatatctatatgcttttcattgtggattttcaa |
100 |
Q |
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| T |
9440890 |
gtaatttcaatattgtggacttttagatcgtatggttcacttcatggagaaaaagaaaagtcttttaaatatctatatgattttcattgtggattttcaa |
9440791 |
T |
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| Q |
101 |
atcttatggttcaatgtggactattaaatcgtatggacgtgtcaataaactatcgtcccaattattatatccatacgtatttttataatctggttctttt |
200 |
Q |
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| T |
9440790 |
atcttatggttcaatgtggactattaaatcgtatggacgtgtcaataaactatcgtcccaattat--tatccatacgtatttttataatctggttcttct |
9440693 |
T |
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| Q |
201 |
tataatgtctctccccaaaccatatgttaccctattgttatcaataactacaaaaatggt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9440692 |
tataatgtctctccccaaaccatatgttaccctattgttatcaataactacaaaaatggt |
9440633 |
T |
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