View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_high_21 (Length: 270)

Name: NF1520_high_21
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_high_21
NF1520_high_21
[»] chr6 (17 HSPs)
chr6 (2-135)||(14666136-14666266)
chr6 (194-240)||(6517505-6517551)
chr6 (194-240)||(7905245-7905291)
chr6 (194-240)||(10781149-10781195)
chr6 (194-240)||(32593492-32593538)
chr6 (195-240)||(7160807-7160852)
chr6 (195-240)||(22502777-22502822)
chr6 (201-240)||(22503152-22503191)
chr6 (201-240)||(31406887-31406926)
chr6 (194-240)||(21836408-21836454)
chr6 (195-240)||(21836035-21836080)
chr6 (195-240)||(31407256-31407301)
chr6 (206-240)||(7161182-7161216)
chr6 (194-239)||(14196617-14196662)
chr6 (195-240)||(15913551-15913596)
chr6 (194-239)||(15913927-15913972)
chr6 (195-239)||(7905622-7905666)
[»] chr8 (28 HSPs)
chr8 (188-240)||(8998067-8998119)
chr8 (194-240)||(44664886-44664932)
chr8 (195-240)||(8997859-8997904)
chr8 (194-238)||(6472395-6472439)
chr8 (195-238)||(6471693-6471736)
chr8 (201-240)||(7983437-7983476)
chr8 (201-240)||(44664517-44664556)
chr8 (194-240)||(234118-234164)
chr8 (194-240)||(710529-710575)
chr8 (194-240)||(747741-747787)
chr8 (194-240)||(871636-871682)
chr8 (194-240)||(15229933-15229979)
chr8 (194-240)||(35634477-35634523)
chr8 (194-240)||(41353951-41353997)
chr8 (195-240)||(10445713-10445758)
chr8 (195-240)||(37542227-37542272)
chr8 (195-240)||(41353577-41353622)
chr8 (195-240)||(42945492-42945537)
chr8 (188-240)||(15230309-15230361)
chr8 (201-240)||(25124941-25124980)
chr8 (194-240)||(21432695-21432741)
chr8 (201-239)||(37542604-37542642)
chr8 (194-239)||(11675044-11675089)
chr8 (194-239)||(23505054-23505099)
chr8 (195-240)||(25124566-25124611)
chr8 (195-240)||(38003784-38003829)
chr8 (194-238)||(23507807-23507851)
chr8 (195-239)||(36325584-36325628)
[»] chr4 (29 HSPs)
chr4 (189-240)||(45463070-45463121)
chr4 (188-240)||(52573606-52573658)
chr4 (188-240)||(54858556-54858608)
chr4 (184-240)||(54858938-54858994)
chr4 (194-240)||(3032584-3032630)
chr4 (194-240)||(27069288-27069334)
chr4 (195-240)||(11523952-11523997)
chr4 (195-240)||(39701287-39701332)
chr4 (189-240)||(22987229-22987280)
chr4 (194-240)||(10407891-10407937)
chr4 (202-240)||(10408267-10408305)
chr4 (194-240)||(16605604-16605650)
chr4 (194-240)||(27068912-27068958)
chr4 (194-236)||(27149377-27149419)
chr4 (194-240)||(50504203-50504249)
chr4 (194-240)||(52573230-52573276)
chr4 (195-240)||(22717942-22717987)
chr4 (203-240)||(22718317-22718354)
chr4 (203-240)||(22986862-22986899)
chr4 (195-240)||(45463451-45463496)
chr4 (189-239)||(22567136-22567186)
chr4 (188-238)||(50503821-50503871)
chr4 (194-240)||(51859784-51859830)
chr4 (195-240)||(5818153-5818198)
chr4 (203-240)||(22923149-22923186)
chr4 (203-240)||(22927802-22927839)
chr4 (203-240)||(22984081-22984118)
chr4 (203-240)||(22997669-22997706)
chr4 (199-239)||(27934868-27934908)
[»] chr1 (25 HSPs)
chr1 (187-240)||(25885371-25885424)
chr1 (189-240)||(8898514-8898565)
chr1 (194-240)||(7371547-7371593)
chr1 (194-240)||(17188956-17189002)
chr1 (194-240)||(20760883-20760929)
chr1 (194-240)||(30326498-30326544)
chr1 (194-240)||(37929420-37929466)
chr1 (194-240)||(40714446-40714492)
chr1 (194-240)||(40714821-40714867)
chr1 (192-242)||(44523514-44523564)
chr1 (194-240)||(45750220-45750266)
chr1 (194-240)||(49955725-49955771)
chr1 (188-240)||(45749838-45749890)
chr1 (194-240)||(8898895-8898941)
chr1 (194-240)||(17189229-17189275)
chr1 (194-240)||(28325181-28325227)
chr1 (194-240)||(31050952-31050998)
chr1 (194-240)||(49955349-49955395)
chr1 (188-239)||(28011718-28011769)
chr1 (194-240)||(31058435-31058481)
chr1 (194-240)||(32558485-32558531)
chr1 (195-240)||(7371293-7371338)
chr1 (194-239)||(24905169-24905214)
chr1 (195-240)||(35040992-35041037)
chr1 (194-242)||(25884703-25884751)
[»] chr3 (28 HSPs)
chr3 (192-240)||(33506178-33506226)
chr3 (188-240)||(33506328-33506380)
chr3 (188-240)||(37778651-37778703)
chr3 (189-240)||(32306421-32306472)
chr3 (194-240)||(10294569-10294615)
chr3 (194-240)||(13949073-13949119)
chr3 (190-240)||(29118525-29118575)
chr3 (194-240)||(40788798-40788844)
chr3 (191-240)||(29686318-29686367)
chr3 (195-240)||(32306802-32306847)
chr3 (195-240)||(33156374-33156419)
chr3 (194-242)||(11910701-11910749)
chr3 (200-240)||(29118916-29118956)
chr3 (189-240)||(3469197-3469248)
chr3 (195-242)||(52032141-52032188)
chr3 (189-240)||(52032517-52032568)
chr3 (194-240)||(3469578-3469624)
chr3 (194-240)||(13948782-13948828)
chr3 (194-240)||(29685943-29685989)
chr3 (195-240)||(3596112-3596157)
chr3 (195-240)||(41421975-41422020)
chr3 (206-240)||(35643865-35643899)
chr3 (194-240)||(42855685-42855731)
chr3 (194-240)||(47551495-47551541)
chr3 (183-240)||(10294937-10294994)
chr3 (194-239)||(36314300-36314345)
chr3 (195-239)||(10770493-10770537)
chr3 (195-239)||(10770841-10770885)
[»] chr7 (22 HSPs)
chr7 (189-240)||(32934726-32934777)
chr7 (194-240)||(25453130-25453176)
chr7 (194-240)||(27138319-27138365)
chr7 (194-240)||(42617913-42617959)
chr7 (194-240)||(43266268-43266314)
chr7 (194-240)||(43266644-43266690)
chr7 (195-240)||(42618289-42618334)
chr7 (195-240)||(46204424-46204469)
chr7 (200-240)||(10600034-10600074)
chr7 (194-242)||(23058805-23058853)
chr7 (188-240)||(25628856-25628908)
chr7 (194-242)||(32068472-32068520)
chr7 (194-240)||(22081562-22081608)
chr7 (195-240)||(10600327-10600372)
chr7 (195-240)||(25628481-25628526)
chr7 (195-240)||(28890582-28890627)
chr7 (195-240)||(32068099-32068144)
chr7 (194-240)||(22081937-22081983)
chr7 (194-240)||(23058431-23058477)
chr7 (194-240)||(33828352-33828398)
chr7 (194-239)||(32680597-32680642)
chr7 (195-240)||(32934351-32934396)
[»] chr2 (10 HSPs)
chr2 (189-240)||(8710846-8710897)
chr2 (194-240)||(28226122-28226168)
chr2 (195-240)||(8342557-8342602)
chr2 (189-240)||(15604336-15604387)
chr2 (201-240)||(41588436-41588475)
chr2 (194-240)||(11830366-11830412)
chr2 (195-240)||(8342190-8342235)
chr2 (195-239)||(6573050-6573094)
chr2 (194-239)||(6573545-6573590)
chr2 (194-239)||(41587237-41587282)
[»] scaffold0771 (2 HSPs)
scaffold0771 (194-240)||(1213-1259)
scaffold0771 (194-240)||(922-968)
[»] scaffold0006 (2 HSPs)
scaffold0006 (194-240)||(222167-222213)
scaffold0006 (195-240)||(221794-221839)
[»] chr5 (7 HSPs)
chr5 (194-240)||(17544426-17544472)
chr5 (200-240)||(8875645-8875685)
chr5 (188-240)||(33871716-33871768)
chr5 (194-240)||(8875451-8875497)
chr5 (194-240)||(20153293-20153339)
chr5 (194-240)||(3656796-3656842)
chr5 (194-240)||(20152783-20152829)
[»] scaffold0388 (1 HSPs)
scaffold0388 (195-240)||(12617-12662)
[»] scaffold0599 (1 HSPs)
scaffold0599 (194-242)||(2395-2443)
[»] scaffold0328 (1 HSPs)
scaffold0328 (194-240)||(11518-11564)
[»] scaffold0042 (1 HSPs)
scaffold0042 (194-242)||(12156-12204)
[»] scaffold0205 (1 HSPs)
scaffold0205 (189-239)||(21006-21056)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 14666266 - 14666136
Alignment:
Q  2 aaatactccttttgcatattcttttccatcctttcaaattattcaacataaaaattcctgagattcacctttagtttttatttatgcgtatcataatttg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||  |||   |||||    
T  14666266 aaatactccttttgcatattcttttccatcctttcaaattattcaacataaaaaatcttgagattcacctttaggttttatttatgccaatc---atttg 14666170  T
Q  102 tttgtttatgtaattattgttttgggttgaaatg 135  Q
    |||||||||||||||||| |||||||||||||||    
T  14666169 tttgtttatgtaattattattttgggttgaaatg 14666136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 6517505 - 6517551
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6517505 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 6517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 7905245 - 7905291
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  7905245 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 7905291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10781149 - 10781195
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10781149 cttaatgatgtgtttcgtccttacaattaggcgtcatttaaaaatta 10781195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 32593492 - 32593538
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32593492 cttaatgatgtgtttagtcctttcaattaggcgtcatttaaaaatta 32593538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 7160807 - 7160852
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  7160807 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 7160852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 22502777 - 22502822
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  22502777 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 22502822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 22503191 - 22503152
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  22503191 atgtgtttcgtccttgcaattaggcgtcatttaaaaatta 22503152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 31406887 - 31406926
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  31406887 atgtgtttcgtccttgcaattaggcgtcatttaaaaatta 31406926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 21836454 - 21836408
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  21836454 cttaatgatgtgtttcatccttgcaattaggcgtcatttaaaaatta 21836408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 21836035 - 21836080
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  21836035 ttaatgatgtgtttcgttcttgcaattaggcgtcatttaaaaatta 21836080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 31407301 - 31407256
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||    
T  31407301 ttaatgatgtgcttcgtccttgcaattaggcgtcatttaaaaatta 31407256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 7161216 - 7161182
Alignment:
Q  206 tttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||| ||||||||||||||||||||||||    
T  7161216 tttcgtccttgcaattaggcgtcatttaaaaatta 7161182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 14196617 - 14196662
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  14196617 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 14196662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 15913551 - 15913596
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||||||||||  || ||||||||||||||||||||||||    
T  15913551 ttaatgatgtgtttcgttattgcaattaggcgtcatttaaaaatta 15913596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 15913972 - 15913927
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||||||||||||| |||||| | ||||||||||||||    
T  15913972 cttaatgatgtgtttcgtccttgcaattaagggtcatttaaaaatt 15913927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 7905666 - 7905622
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| |||||||||||||||| |||||||| |||||||| |||||    
T  7905666 ttaatgatgtgtttcgtccttgcaattaggtgtcatttataaatt 7905622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8998119 - 8998067
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8998119 aaaagacttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 8998067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 44664932 - 44664886
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44664932 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 44664886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8997859 - 8997904
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  8997859 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 8997904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 6472439 - 6472395
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaat 238  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  6472439 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaat 6472395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 6471693 - 6471736
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaat 238  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  6471693 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaat 6471736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 7983437 - 7983476
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  7983437 atgtgtttcgtccttgcaattaggcgtcatttaaaaatta 7983476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 44664517 - 44664556
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  44664517 atgtgtttcgtccttgcaattaggcgtcatttaaaaatta 44664556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 234164 - 234118
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  234164 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 234118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 710575 - 710529
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  710575 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 710529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 747787 - 747741
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  747787 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 747741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 871682 - 871636
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  871682 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 871636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 15229933 - 15229979
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  15229933 cttaatgatgtgttttgtccttgcaattaggcgtcatttaaaaatta 15229979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 35634523 - 35634477
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  35634523 cttaatgatgtgtttcgtccttgcaattaagcgtcatttaaaaatta 35634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 41353997 - 41353951
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  41353997 cttaatgatgtgtttcgtccttataattaggcgtcatttaaaaatta 41353951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 10445758 - 10445713
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||    
T  10445758 ttaatgatgtgtttcgtccttgcaattaggtgtcatttaaaaatta 10445713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 37542227 - 37542272
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||    
T  37542227 ttaatgatgtgtttcgtctttgcaattaggcgtcatttaaaaatta 37542272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 41353577 - 41353622
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||    
T  41353577 ttaatgatatgtttcgtccttacaattaggcgtcatttaaaaatta 41353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 42945537 - 42945492
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  42945537 ttaatgatgtgtttcgttcttgcaattaggcgtcatttaaaaatta 42945492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 15230361 - 15230309
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| ||||||||| |||||| |||||||| |||||||||||||||    
T  15230361 aaaaggcttaatgatgtgttttgtccttgcaattaggtgtcatttaaaaatta 15230309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 25124980 - 25124941
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  25124980 atgtgtttcgtccttgcaattaggtgtcatttaaaaatta 25124941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 21432695 - 21432741
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||| |||||| |||||||||    
T  21432695 cttaatgatgtgtttcgtccttgcaattagacgtcatataaaaatta 21432741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 37542642 - 37542604
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  37542642 atgtgtttcatccttacaattaggcgtcatttaaaaatt 37542604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 11675089 - 11675044
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  11675089 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 11675044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 23505054 - 23505099
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  23505054 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 23505099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 25124566 - 25124611
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||| ||| ||||||||||||||||||||||||    
T  25124566 ttaatgatgtatttcgttcttgcaattaggcgtcatttaaaaatta 25124611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 38003829 - 38003784
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||| ||| ||||||||||||    
T  38003829 ttaatgatgtgtttcgtccttgcaattagtcgtaatttaaaaatta 38003784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 23507851 - 23507807
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaat 238  Q
    ||||| |||||| || |||||| ||||||||||||||||||||||    
T  23507851 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaat 23507807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 36325628 - 36325584
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| |||||| || |||||| |||||||||||||||||||||||    
T  36325628 ttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 36325584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 45463070 - 45463121
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  45463070 aaagacttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 45463121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 52573658 - 52573606
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  52573658 aaaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 52573606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 54858556 - 54858608
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  54858556 aaaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 54858608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 54858994 - 54858938
Alignment:
Q  184 tttgaaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  54858994 tttggaaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 54858938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 3032584 - 3032630
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3032584 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 3032630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 27069334 - 27069288
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27069334 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 27069288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 11523952 - 11523997
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  11523952 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 11523997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 39701332 - 39701287
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  39701332 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 39701287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 22987280 - 22987229
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  22987280 aaaggcttaatgatgtgtttcgtccttacaattagacgtcatttaaaaatta 22987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10407891 - 10407937
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||    
T  10407891 cttaatgatgtgtttcgtccttgcaattaggagtcatttaaaaatta 10407937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 10408305 - 10408267
Alignment:
Q  202 tgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10408305 tgtgtttcgtccttgcaattaggcgtcatttaaaaatta 10408267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 16605604 - 16605650
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||    
T  16605604 cttaatgatgtgtttcgtccttgcaattaggtgtcatttaaaaatta 16605650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 27068912 - 27068958
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  27068912 cttaaggatgtgtttcgtccttgcaattaggcatcatttaaaaatta 27068958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 27149419 - 27149377
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaa 236  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  27149419 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaa 27149377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 50504249 - 50504203
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  50504249 cttaatgatgtgtttcgtccttgtaattaggcgtcatttaaaaatta 50504203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 52573230 - 52573276
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  52573230 cttaatgatgtgtttcgtctttgcaattaggcgtcatttaaaaatta 52573276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 22717942 - 22717987
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  22717942 ttaatgatgtgtttcgtccttacaattagacgtcatttaaaaatta 22717987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 22718354 - 22718317
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22718354 gtgtttcgtccttttaattaggcgtcatttaaaaatta 22718317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22986862 - 22986899
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22986862 gtgtttcgtccttttaattaggcgtcatttaaaaatta 22986899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 45463496 - 45463451
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||    
T  45463496 ttaatgatatgtttcgtccttgcaattaggcgtcatttaaaaatta 45463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 22567186 - 22567136
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| ||||| |||||| || |||||| |||||||||||||||||||||||    
T  22567186 aaaggcttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 22567136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 50503821 - 50503871
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaat 238  Q
    ||||| ||||| |||||||||||||||  ||||||||| ||||||||||||    
T  50503821 aaaaggcttaatgatgtgtttcgtcctcgcaattaggcatcatttaaaaat 50503871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 51859830 - 51859784
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||||||    
T  51859830 cttaatgatgtgtttcgtccttgcaattagacgtaatttaaaaatta 51859784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 5818198 - 5818153
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||||||||||| ||  |||||||||||||||||||||||    
T  5818198 ttaatgatgtgtttcgtctttgtaattaggcgtcatttaaaaatta 5818153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22923149 - 22923186
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  22923149 gtgtttcgtccttttaattagacgtcatttaaaaatta 22923186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22927802 - 22927839
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  22927802 gtgtttcgtccttttaattagacgtcatttaaaaatta 22927839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22984081 - 22984118
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  22984081 gtgtttcgtccttttaattagacgtcatttaaaaatta 22984118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22997669 - 22997706
Alignment:
Q  203 gtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  22997669 gtgtttcgtccttttaattagacgtcatttaaaaatta 22997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 27934908 - 27934868
Alignment:
Q  199 cgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  27934908 cgatgtgattagtccttgcaattaggcgtcatttaaaaatt 27934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 25885424 - 25885371
Alignment:
Q  187 gaaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25885424 gaaaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 25885371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 8898514 - 8898565
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8898514 aaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 8898565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7371593 - 7371547
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7371593 cttaacgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 7371547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 17188956 - 17189002
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17188956 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 17189002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 20760929 - 20760883
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20760929 cttaatgatgtgtttcgtccttacaattaggcgtcatttaaaaatta 20760883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 30326498 - 30326544
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30326498 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 30326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 37929420 - 37929466
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37929420 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 37929466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 40714446 - 40714492
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40714446 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 40714492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 40714867 - 40714821
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40714867 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 40714821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 44523564 - 44523514
Alignment:
Q  192 gacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  44523564 gacttaatgatgtgtttcgtccttgcaattaggcctcatttaaaaattaat 44523514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 45750266 - 45750220
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  45750266 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 45750220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 49955771 - 49955725
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  49955771 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 49955725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 45749838 - 45749890
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  45749838 aaaaggcttaatgatgtgtttcatccttgcaattaggcgtcatttaaaaatta 45749890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 8898941 - 8898895
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  8898941 cttaatgatgtgtttcgtccttgtaattaggcgtcatttaaaaatta 8898895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 17189275 - 17189229
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  17189275 cttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 17189229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 28325227 - 28325181
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  28325227 cttaatgatgtgtttcggccttgcaattaggcgtcatttaaaaatta 28325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 31050952 - 31050998
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  31050952 cttaatgatgtgtttcgtccttgcaattaggcgttatttaaaaatta 31050998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 49955349 - 49955395
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  49955349 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 49955395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 28011769 - 28011718
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| ||||| |||||| || |||||| |||||||||||||||||||||||    
T  28011769 aaaaggcttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 28011718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 31058481 - 31058435
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||| | ||||||||||||||    
T  31058481 cttaatgatgtgtttcgtccttgcaattagacatcatttaaaaatta 31058435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 32558531 - 32558485
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  32558531 cttaatgatgtgttttgtccttacaattagacgtcatttaaaaatta 32558485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 7371293 - 7371338
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||| |||||||||||| |||||||| |||||||||||||||    
T  7371293 ttaatgatatgtttcgtccttgcaattaggtgtcatttaaaaatta 7371338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 24905169 - 24905214
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  24905169 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 24905214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 35041037 - 35040992
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||||||||||||||  |||||| ||||||||||||||||    
T  35041037 ttaatgatgtgtttcgtccttgtaattagccgtcatttaaaaatta 35040992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 25884703 - 25884751
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| ||||||||||||| || ||||||| |||||||||||| |||||    
T  25884703 cttaatgatgtgtttcgtcattgcaattagacgtcatttaaaatttaat 25884751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33506178 - 33506226
Alignment:
Q  192 gacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  33506178 gacttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 33506226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 33506380 - 33506328
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  33506380 aaaaggcttaatgatgtgtttcgtcctttcaattaggcgttatttaaaaatta 33506328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 37778703 - 37778651
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37778703 aaaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 37778651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 32306421 - 32306472
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32306421 aaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 32306472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10294569 - 10294615
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10294569 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 10294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 13949119 - 13949073
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13949119 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 13949073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 29118525 - 29118575
Alignment:
Q  190 aagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  29118525 aagacttaatgatgtgtttcgtccttgcaattatgcgtcatttaaaaatta 29118575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 40788844 - 40788798
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40788844 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 40788798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 29686367 - 29686318
Alignment:
Q  191 agacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  29686367 agacttaatgatgtgtttcgtccttgcaattaggcgtcattttaaaatta 29686318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 32306847 - 32306802
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  32306847 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 32306802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 33156419 - 33156374
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  33156419 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 33156374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11910701 - 11910749
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  11910701 cttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaattaat 11910749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 29118956 - 29118916
Alignment:
Q  200 gatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  29118956 gatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 29118916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 3469197 - 3469248
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  3469197 aaaggcttaatgatgtgtttcgtctttgcaattaggcgtcatttaaaaatta 3469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 52032141 - 52032188
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  52032141 ttaatgatgtgttttgtccttgcaattaggcgtcatttaaaaattaat 52032188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 52032568 - 52032517
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  52032568 aaaggcttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 52032517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 3469624 - 3469578
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  3469624 cttaatgatctgtttcgtccttgcaattaggcgtcatttaaaaatta 3469578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 13948782 - 13948828
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  13948782 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 13948828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 29685943 - 29685989
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  29685943 cttaatgatgtatttcgtccttgcaattaggcgtcatttaaaaatta 29685989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 3596112 - 3596157
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||    
T  3596112 ttaatgatgtgtttcgtccttgcaattaggcgtgatttaaaaatta 3596157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 41421975 - 41422020
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  41421975 ttaatgatgtgtttcgtccttgcaattaggcgtcagttaaaaatta 41422020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 35643865 - 35643899
Alignment:
Q  206 tttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||| ||||||||||||||||||||||||    
T  35643865 tttcgtccttgcaattaggcgtcatttaaaaatta 35643899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 42855731 - 42855685
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||| | |||| ||||||||||||||||||||||||    
T  42855731 cttaatgatgtgtttagcccttgcaattaggcgtcatttaaaaatta 42855685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 47551495 - 47551541
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||    
T  47551495 cttaatgatgtgtttcgtccttgcaattagatgtcatttaaaaatta 47551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 10294994 - 10294937
Alignment:
Q  183 atttgaaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| ||||| |||||||||||||||| |||| || ||| ||||||||||||    
T  10294994 atttcaaaaggcttaatgatgtgtttcgtccttgcaatcagacgtaatttaaaaatta 10294937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 36314300 - 36314345
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  36314300 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 36314345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 10770493 - 10770537
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| |||||| || |||||| |||||||||||||||||||||||    
T  10770493 ttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 10770537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 10770885 - 10770841
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| |||||| || |||||| |||||||||||||||||||||||    
T  10770885 ttaatgatgtgattagtccttacaattaggcgtcatttaaaaatt 10770841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 32934777 - 32934726
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32934777 aaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 32934726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25453130 - 25453176
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25453130 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 25453176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 27138365 - 27138319
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  27138365 cttaatgatgtgtttcgtcctttcaatcaggcgtcatttaaaaatta 27138319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 42617913 - 42617959
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  42617913 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 42617959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 43266268 - 43266314
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43266268 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 43266314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 43266690 - 43266644
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43266690 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 43266644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 42618334 - 42618289
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  42618334 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 42618289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 46204424 - 46204469
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  46204424 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 46204469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 10600034 - 10600074
Alignment:
Q  200 gatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10600034 gatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 10600074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 23058853 - 23058805
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  23058853 cttaatgatgtgtttcgtccttgcaattcggcgtcatttaaaaattaat 23058805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 25628908 - 25628856
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||| ||||||| |||||||| |||||| |||||||||||||||||    
T  25628908 aaaagacttaatgatgtgtctcgtccttgcaattatgcgtcatttaaaaatta 25628856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32068520 - 32068472
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  32068520 cttaatgatgtgtttcgtccttgcaattaggagtcatttaaaaattaat 32068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 22081562 - 22081608
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  22081562 cttaatgatgtgtttcgtccttgcaattatgcgtcatttaaaaatta 22081608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 10600372 - 10600327
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||    
T  10600372 ttaatgatgtgtttcgtcattgcaattaggcgtcatttaaaaatta 10600327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 25628481 - 25628526
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  25628481 ttaatgatgtgtttcgtgcttgcaattaggcgtcatttaaaaatta 25628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 28890582 - 28890627
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  28890582 ttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 28890627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 32068099 - 32068144
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  32068099 ttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 32068144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 22081983 - 22081937
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||| |||||||||||| |||||| |||||||||||||||||    
T  22081983 cttaatgatttgtttcgtccttgcaattatgcgtcatttaaaaatta 22081937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 23058431 - 23058477
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||| | |||||||||||||||    
T  23058431 cttaatgatgtgtttcgtccttgcaattaagagtcatttaaaaatta 23058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 33828398 - 33828352
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  33828398 cttaatgatgagtttcgtccttgcaattaggtgtcatttaaaaatta 33828352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 32680597 - 32680642
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||    
T  32680597 cttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 32680642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 32934351 - 32934396
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||| ||||| |||||||| |||||||||||||||    
T  32934351 ttaatgatgtgtttcatccttgcaattaggtgtcatttaaaaatta 32934396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 8710897 - 8710846
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8710897 aaaggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 8710846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 28226168 - 28226122
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  28226168 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 28226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 8342602 - 8342557
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  8342602 ttaatgatgtgtttcgtccttacaattaggcgtcatttaaaaatta 8342557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 15604336 - 15604387
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||||||||    
T  15604336 aaaggcttaatgatgtgtttcgtccttgcaattaggtgtcatttaaaaatta 15604387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 41588475 - 41588436
Alignment:
Q  201 atgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  41588475 atgtgtttcgtccttacaattaggcgtcatttaaaaatta 41588436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 11830366 - 11830412
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  11830366 cttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaatta 11830412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8342190 - 8342235
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||    
T  8342190 ttaatgatgtgtttcgtccttgcaattaagcgtcatttaaaaatta 8342235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 6573050 - 6573094
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| |||||||||||||| | |||||||||||||||||||||||    
T  6573050 ttaatgatgtgtttcgtccctgcaattaggcgtcatttaaaaatt 6573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 6573545 - 6573590
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||||    
T  6573545 cttaatgatgtgtttcatccctccaattaggcgtcatttaaaaatt 6573590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 41587237 - 41587282
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    ||||| |||||||||||||||| |||||| | ||||||||||||||    
T  41587237 cttaatgatgtgtttcgtccttgcaattaagagtcatttaaaaatt 41587282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 1259 - 1213
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1259 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 922 - 968
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  922 cttaatgatgtgtttcgtccttgcaattaggcatcatttaaaaatta 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 222213 - 222167
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  222213 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 222167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 221794 - 221839
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  221794 ttaatgatgtgtttcgttcttgcaattaggcgtcatttaaaaatta 221839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 17544472 - 17544426
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17544472 cttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 17544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 8875685 - 8875645
Alignment:
Q  200 gatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  8875685 gatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 8875645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 33871768 - 33871716
Alignment:
Q  188 aaaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||| |||||||||||||||| |||||||||| |||||||||||||    
T  33871768 aaaaggcttaatgatgtgtttcgtccttgcaattaggcgccatttaaaaatta 33871716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 8875451 - 8875497
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  8875451 cttaatgatgtgtttcgtccttgcaattaagcgtcatttaaaaatta 8875497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 20153339 - 20153293
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||    
T  20153339 cttaatgatgtgtttcgtccttgcaattaggtgtcatttaaaaatta 20153293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 3656842 - 3656796
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||||||||    
T  3656842 cttaatgatgtgtttcgaccttgcaattagacgtcatttaaaaatta 3656796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 20152783 - 20152829
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||    
T  20152783 cttaatgatgtgtttcgtccatgcaattaagcgtcatttaaaaatta 20152829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 12662 - 12617
Alignment:
Q  195 ttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  12662 ttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaatta 12617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 2395 - 2443
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  2395 cttaatgatgtgtttcgtccttgcaattagacgtcatttaaaaattaat 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 11564 - 11518
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatta 240  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  11564 cttaatgatgtgtttcatccttgcaattaggcgtcatttaaaaatta 11518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 12204 - 12156
Alignment:
Q  194 cttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaattaat 242  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||||||||    
T  12204 cttaatgatgtgtttcgtccttgcaattaaacgtcatttaaaaattaat 12156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 21006 - 21056
Alignment:
Q  189 aaagacttaacgatgtgtttcgtcctttcaattaggcgtcatttaaaaatt 239  Q
    |||| ||||| |||||| || |||||| |||||||||||||||||||||||    
T  21006 aaaggcttaatgatgtgattagtccttgcaattaggcgtcatttaaaaatt 21056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University