View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1520_high_23 (Length: 237)
Name: NF1520_high_23
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 43163303 - 43163087
Alignment:
| Q |
4 |
atcaaacctccccaaaagctccaaagagttaaaaagataggcaccatcactgctaagaactctaagctctaaaactgaaataaaaggtgtacccttgcca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43163303 |
atcaaacctccccaaaagctccaaagagttatcaagataggcatcatcactgctaagaactctaagctctaaaactgaaataaaaggtgtacccttgcca |
43163204 |
T |
|
| Q |
104 |
gtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttccttgctaattacactagatgaattctcaaacaccattgattcccacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43163203 |
gtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttccttgctaattacactagatgaattctcaaacaccattgattcccacc |
43163104 |
T |
|
| Q |
204 |
atttggctccaagatag |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43163103 |
atttggctccaagatag |
43163087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43173045 - 43172829
Alignment:
| Q |
1 |
tacatcaaacctccccaaaagctccaaagagttaaaaagataggcaccatcactgctaagaactctaagctctaaaactgaaataaaaggtgtacccttg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43173045 |
tacatcaaacctcgccaaaagctccaaagagttaaaaagataggca---tcactgttaagaactctaagctctaaaactgaaataaaaggtgtacccttg |
43172949 |
T |
|
| Q |
101 |
ccagtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttccttgctaattacactagatgaattctcaaacaccattgattccc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||| | ||||||| |
|
|
| T |
43172948 |
ccagtattaaacatacaaacatgaacataatctgaggatgcagcataaatgatttccttggttattacaccggatgaatcctcaaacactacagattccc |
43172849 |
T |
|
| Q |
201 |
accatttggctccaagatag |
220 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
43172848 |
accatttggttccaagatag |
43172829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University