View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_high_3 (Length: 458)
Name: NF1520_high_3
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 53175434 - 53175165
Alignment:
| Q |
1 |
tcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacg |
100 |
Q |
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| T |
53175434 |
tcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacg |
53175335 |
T |
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| Q |
101 |
tggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaagaccaacttgg |
200 |
Q |
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| T |
53175334 |
tggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaaaaccaacatgg |
53175235 |
T |
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| Q |
201 |
aaatgtttctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
270 |
Q |
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| T |
53175234 |
aaatgtttctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
53175165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 349 - 439
Target Start/End: Complemental strand, 53175081 - 53174991
Alignment:
| Q |
349 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaaga |
439 |
Q |
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| T |
53175081 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaaga |
53174991 |
T |
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