View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1520_high_6 (Length: 433)
Name: NF1520_high_6
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 133 - 334
Target Start/End: Original strand, 8885603 - 8885804
Alignment:
| Q |
133 |
catgtcctcttcatcatccacttccttttcaccggaccagcaacaacagcaacaactctctccttcggaccagctttgttatgtccattgcaatttctgt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885603 |
catgtcctcttcatcatccacttccttttcaccggaccagcaacaacagcaacaactctctccttcggaccagctttgttatgtccattgcaatttctgc |
8885702 |
T |
|
| Q |
233 |
gacactgttctcgcggtattatcttatctcatcacactttctctttataaaacatgtctttttatgacccttttaattaagaattaagatactaattata |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885703 |
gacactgttctcgcggtattatcttatctcatcacactttctctttataaaacatgtctttttatgacccttttaattaagaattaagatactaattata |
8885802 |
T |
|
| Q |
333 |
ga |
334 |
Q |
| |
|
|| |
|
|
| T |
8885803 |
ga |
8885804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 8885830 - 8885887
Alignment:
| Q |
362 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885830 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattg |
8885887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8885471 - 8885526
Alignment:
| Q |
1 |
tatctatctatctatcatatcacacacccaagaaacttcactgatcagtcaatccc |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885471 |
tatctatctatctatcatatcacacacccaagaaacttcactgatcagtcaatccc |
8885526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 42026314 - 42026257
Alignment:
| Q |
362 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattg |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
42026314 |
aggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattg |
42026257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University