View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_high_7 (Length: 432)

Name: NF1520_high_7
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_high_7
NF1520_high_7
[»] chr2 (13 HSPs)
chr2 (95-417)||(26487572-26487894)
chr2 (17-95)||(19637469-19637547)
chr2 (17-95)||(19836062-19836140)
chr2 (126-245)||(37545706-37545825)
chr2 (96-199)||(8536831-8536934)
chr2 (126-209)||(37546499-37546582)
chr2 (126-218)||(41768669-41768761)
chr2 (96-143)||(26893482-26893529)
chr2 (96-143)||(26898921-26898968)
chr2 (114-200)||(8536155-8536241)
chr2 (96-144)||(6851912-6851960)
chr2 (96-144)||(6852809-6852857)
chr2 (121-167)||(34617678-34617724)
[»] chr5 (6 HSPs)
chr5 (95-417)||(7494984-7495306)
chr5 (126-218)||(6804759-6804851)
chr5 (96-144)||(42993200-42993248)
chr5 (96-144)||(43589162-43589210)
chr5 (98-144)||(18153434-18153480)
chr5 (121-199)||(4554682-4554760)
[»] chr1 (17 HSPs)
chr1 (96-417)||(38618230-38618531)
chr1 (126-223)||(11032140-11032237)
chr1 (126-269)||(11031461-11031603)
chr1 (96-145)||(50354995-50355044)
chr1 (94-144)||(24976719-24976769)
chr1 (94-144)||(29334947-29334997)
chr1 (126-191)||(7463445-7463510)
chr1 (126-191)||(11426883-11426948)
chr1 (126-199)||(11469111-11469184)
chr1 (126-199)||(14924704-14924777)
chr1 (126-199)||(14925287-14925360)
chr1 (96-145)||(51610220-51610269)
chr1 (96-144)||(51976264-51976312)
chr1 (126-200)||(31787508-31787582)
chr1 (126-200)||(37889909-37889983)
chr1 (126-199)||(31788221-31788294)
chr1 (126-218)||(7463996-7464088)
[»] chr3 (12 HSPs)
chr3 (202-417)||(37373593-37373808)
chr3 (17-95)||(45517449-45517527)
chr3 (126-223)||(55193618-55193715)
chr3 (130-212)||(15450259-15450341)
chr3 (96-144)||(35432221-35432269)
chr3 (126-199)||(38337422-38337495)
chr3 (96-144)||(44406197-44406245)
chr3 (126-183)||(27452653-27452710)
chr3 (126-199)||(52398973-52399046)
chr3 (96-144)||(7359842-7359890)
chr3 (126-186)||(38336974-38337034)
chr3 (126-202)||(55124444-55124520)
[»] chr7 (13 HSPs)
chr7 (126-245)||(27599241-27599360)
chr7 (126-269)||(27599971-27600113)
chr7 (96-146)||(34852557-34852607)
chr7 (126-202)||(12732277-12732353)
chr7 (138-212)||(40905717-40905791)
chr7 (130-199)||(46757458-46757527)
chr7 (126-210)||(40905061-40905145)
chr7 (96-136)||(42344222-42344262)
chr7 (96-144)||(46814247-46814295)
chr7 (96-145)||(34853333-34853382)
chr7 (96-144)||(5004188-5004236)
chr7 (123-199)||(7677754-7677830)
chr7 (96-144)||(30916496-30916544)
[»] chr4 (17 HSPs)
chr4 (126-209)||(30808651-30808734)
chr4 (126-245)||(45331352-45331471)
chr4 (96-200)||(53664212-53664316)
chr4 (126-209)||(45330595-45330678)
chr4 (130-209)||(30809440-30809519)
chr4 (100-175)||(50710386-50710461)
chr4 (96-199)||(53665031-53665134)
chr4 (138-212)||(34956326-34956400)
chr4 (138-212)||(50709034-50709108)
chr4 (121-200)||(6246809-6246888)
chr4 (126-199)||(6680287-6680360)
chr4 (96-144)||(20681722-20681770)
chr4 (130-199)||(10421526-10421595)
chr4 (134-199)||(15481073-15481138)
chr4 (96-144)||(23574617-23574665)
chr4 (126-216)||(34956966-34957056)
chr4 (95-144)||(55511901-55511950)
[»] chr8 (11 HSPs)
chr8 (96-199)||(38686303-38686406)
chr8 (96-200)||(33802317-33802421)
chr8 (96-199)||(33801499-33801602)
chr8 (101-200)||(38686999-38687098)
chr8 (101-162)||(32551090-32551151)
chr8 (126-199)||(43924963-43925036)
chr8 (126-199)||(43924520-43924593)
chr8 (96-144)||(42638148-42638196)
chr8 (121-199)||(12350599-12350677)
chr8 (126-200)||(39257664-39257738)
chr8 (126-200)||(43971308-43971382)
[»] scaffold0071 (1 HSPs)
scaffold0071 (130-212)||(11850-11932)
[»] scaffold0041 (3 HSPs)
scaffold0041 (138-212)||(44227-44301)
scaffold0041 (126-210)||(44873-44957)
scaffold0041 (123-199)||(27248-27324)
[»] scaffold0189 (2 HSPs)
scaffold0189 (126-199)||(12804-12877)
scaffold0189 (126-200)||(12214-12288)
[»] chr6 (4 HSPs)
chr6 (93-137)||(34716162-34716206)
chr6 (96-137)||(10607351-10607392)
chr6 (96-145)||(19063660-19063709)
chr6 (96-144)||(20687464-20687512)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 95 - 417
Target Start/End: Complemental strand, 26487894 - 26487572
Alignment:
Q  95 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactct 194  Q
    ||||||||||||||||| |||| ||||||||||||| |||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  26487894 tggtggcatttagggtgggtaggaggaattctttcctaccatgagaaagttaagcttgaccattagattaagtagtgaccacattcttatcatagactct 26487795  T
Q  195 caacattatatctaaccatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatct 294  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26487794 caacactatatctaaccatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatct 26487695  T
Q  295 tcactaatcaaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaa 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26487694 tcactaatcaaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacgatgaattatagaatcctgtataaaaatgaaa 26487595  T
Q  395 cattttaacaaagagtggatttt 417  Q
    ||||||||| |||||||||||||    
T  26487594 cattttaactaagagtggatttt 26487572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 19637547 - 19637469
Alignment:
Q  17 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19637547 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttagatgattcttttat 19637469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 19836140 - 19836062
Alignment:
Q  17 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19836140 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttagatgattcttttat 19836062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 37545706 - 37545825
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt-c 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||  ||||| | |||| |    
T  37545706 tttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacaccatatctaa-aatccatcttcttcc 37545804  T
Q  225 ttgcttgcttccaccacctca 245  Q
    ||||||  |||||||||||||    
T  37545805 ttgcttctttccaccacctca 37545825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 8536934 - 8536831
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||| ||  ||||||||||||| |||||| |||||   | ||||||||||| |||    
T  8536934 ggtggcatttagggtgggtagaaggaattctttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactc 8536835  T
Q  196 aaca 199  Q
    ||||    
T  8536834 aaca 8536831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 37546582 - 37546499
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaa 209  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||  ||||||||||||||| |||||||||||||  ||||||||    
T  37546582 tttcccatcatgggaaagttaaatttgaccactagattaagtaacgaacacattcttatcgtagactctcaacaccatatctaa 37546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 41768761 - 41768669
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccacc 218  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||  ||||||||  ||||||||| |||||||||  ||||||||||| |||||    
T  41768761 tttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacaccatatctaaccaaccacc 41768669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 26893482 - 26893529
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 143  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26893482 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26893529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 26898921 - 26898968
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 143  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26898921 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26898968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 8536155 - 8536241
Alignment:
Q  114 tagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    ||||||||||||||| ||||||||||||||| || |||||| ||||||| |||||| |||||   | ||||||||||| ||||||||    
T  8536155 tagaaggaattcttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaacat 8536241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 6851912 - 6851960
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  6851912 ggtggcatttagggtgggtaggaggaattctttcccatcatgggaaagt 6851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 6852857 - 6852809
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  6852857 ggtggcatttagggtgggtaggaggaattctttcccaccataggaaagt 6852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 34617678 - 34617724
Alignment:
Q  121 aattctttcccaccatgggaaagttaaaattgaccattagattaagt 167  Q
    |||| |||||||||||||||||||||   ||||||||||||||||||    
T  34617678 aattgtttcccaccatgggaaagttatttttgaccattagattaagt 34617724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 95 - 417
Target Start/End: Complemental strand, 7495306 - 7494984
Alignment:
Q  95 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactct 194  Q
    ||||| ||||||||||| ||||  ||||||||||||||||||| |||||||||  ||||||||||||||||||||  |||||||||||||||||||||||    
T  7495306 tggtgacatttagggtgggtagggggaattctttcccaccatgagaaagttaagcttgaccattagattaagtagcaaacacattcttatcatagactct 7495207  T
Q  195 caacattatatctaaccatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatct 294  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7495206 caacactatatctaactatccatcatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatct 7495107  T
Q  295 tcactaatcaaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaa 394  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7495106 tcactaatcaaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaa 7495007  T
Q  395 cattttaacaaagagtggatttt 417  Q
    ||||||||| |||||||||||||    
T  7495006 cattttaactaagagtggatttt 7494984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 6804851 - 6804759
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccacc 218  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||  ||||||||  ||||||||| |||||||||  ||||||||||| |||||    
T  6804851 tttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacaccatatctaaccaaccacc 6804759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 42993248 - 42993200
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  42993248 ggtggcatttagggtgggtagaaggaattctatcccaccatggaaaagt 42993200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 43589210 - 43589162
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  43589210 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagt 43589162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 18153480 - 18153434
Alignment:
Q  98 tggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||    
T  18153480 tggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 18153434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 4554682 - 4554760
Alignment:
Q  121 aattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||| ||| |||||||| ||||| |||  ||||||||||||| |||||| ||||| | | ||||||||||| |||||||    
T  4554682 aattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 4554760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 96 - 417
Target Start/End: Original strand, 38618230 - 38618531
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  38618230 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctc 38618329  T
Q  196 aacattatatctaaccatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatctt 295  Q
    |||| ||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38618330 aacactatatcta-------accatcttcttgcttgcttccaccagctcattggtctttctctctccttctctaccaccaccaacaaacttcaaaatctt 38618422  T
Q  296 cactaatcaaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaac 395  Q
    |||||||||||||||||||||||      |||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||    
T  38618423 cactaatcaaactcaagctaaca------taattttagcatgaaccgttcgacaataaatcaacaacaatgaattatagaatcc-------aaatgaaac 38618509  T
Q  396 attttaacaaagagtggatttt 417  Q
    |||||||| |||||||||||||    
T  38618510 attttaactaagagtggatttt 38618531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 11032237 - 11032140
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt 223  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||    
T  11032237 tttcccaccatgggaaagttgaatttgaccattagattaagtaatgaacacattcttatcatggactctcaacaccatatctaaccacccaccctctt 11032140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 269
Target Start/End: Original strand, 11031461 - 11031603
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatcttct 225  Q
    ||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||| ||||||||| |||| ||||||  |  || || | |||||     
T  11031461 tttcccaccatgggaaagttaaatttgaccattagattaagtaatggacacatccttattatagactcttaacactatatc-cagaattcatcttcttcc 11031559  T
Q  226 tgcttgcttccaccacctcattggtctttctctctccttctcta 269  Q
    | |||||||||||||||||||||| | |||||| |||| |||||    
T  11031560 tccttgcttccaccacctcattggaccttctctatcctcctcta 11031603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 50355044 - 50354995
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtt 145  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  50355044 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagtt 50354995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 24976769 - 24976719
Alignment:
Q  94 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  24976769 atggtggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 24976719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 29334997 - 29334947
Alignment:
Q  94 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||| ||||||||||| |||| ||||||| |||||||||||||||||||    
T  29334997 atggtgtcatttagggtgggtaggaggaattatttcccaccatgggaaagt 29334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 7463445 - 7463510
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagac 191  Q
    |||||||||||||||||| |||  |||||||||||||||| ||  ||||||| | |||||||||||    
T  7463445 tttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagac 7463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 11426883 - 11426948
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagac 191  Q
    |||||||||||||||||| |||  |||||||||||||||| ||  ||||||| | |||||||||||    
T  11426883 tttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagac 11426948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 11469111 - 11469184
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||||||| |||  ||||||||||||| | |||| ||||| | | ||||||||||| |||||||    
T  11469111 tttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 11469184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 14924704 - 14924777
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||||||| |||  |||||| ||| ||||| ||| ||||| ||| ||||||||||| |||||||    
T  14924704 tttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaaca 14924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 14925360 - 14925287
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||||||| |||  ||||||||||||| || ||| ||||| | | ||||||||||| |||||||    
T  14925360 tttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaaca 14925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 51610269 - 51610220
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtt 145  Q
    |||||||||||||||| |||| ||||||  ||||||||||||||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 51976264 - 51976312
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  51976264 ggtggcatttagggtgggtaggaggaattcttttccaccatggaaaagt 51976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 31787508 - 31787582
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    ||||||||||||| |||| |||  ||||||||||||| |||||| ||||| | | ||||||||||  ||||||||    
T  31787508 tttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaacat 31787582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 37889909 - 37889983
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    ||||||||||||||||||  ||  |||||||||||||||| ||  ||||||| | |||||||||||  |||||||    
T  37889909 tttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacat 37889983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 31788294 - 31788221
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    ||||||||||||||||||||||  || |||||||||| || ||| ||||| | | ||| ||||||| |||||||    
T  31788294 tttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaaca 31788221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 7464088 - 7463996
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccacc 218  Q
    |||||||||||||||||  |||  |||||||| ||||||| ||| |||||||   |||||||||||  ||||||  | ||| |||||||||||    
T  7464088 tttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacaccaaatccaaccatccacc 7463996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 202 - 417
Target Start/End: Complemental strand, 37373808 - 37373593
Alignment:
Q  202 atatctaaccatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatcttcactaa 301  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37373808 atatctaactatccaccatcttcttgcttgcttccaccacctcattggtctttctctctccttctctaccaccaccagcaaacttcaaaatcttcactaa 37373709  T
Q  302 tcaaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaacatttta 401  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37373708 tcaaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaataatgaattatagaatcctgtataaaaatgaaacatttta 37373609  T
Q  402 acaaagagtggatttt 417  Q
    || |||||||||||||    
T  37373608 actaagagtggatttt 37373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 45517449 - 45517527
Alignment:
Q  17 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45517449 aatgtatatattacgtgcaacaccaccctctggccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 45517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 55193618 - 55193715
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt 223  Q
    |||||||||||||| ||||||||  |||||||||||||||| | |||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||    
T  55193618 tttcccaccatggggaagttaaatctgaccattagattaagcaatgaacacattcttatcatggactctcaacaccatatctaaccacccaccctctt 55193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 15450259 - 15450341
Alignment:
Q  130 ccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||| ||| ||||||||| || ||||   ||||||||||||    
T  15450259 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatagtctttcaatgctatatctaacca 15450341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 35432269 - 35432221
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  35432269 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagt 35432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 38337495 - 38337422
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||||||| |||  |||||| ||||||||| ||| ||||| ||| ||||||||||| |||||||    
T  38337495 tttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 38337422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 44406197 - 44406245
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| | ||||||||||||||||||| |||||    
T  44406197 ggtggcatttagggtgggtaggaagaattctttcccaccatggaaaagt 44406245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 27452653 - 27452710
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattctta 183  Q
    ||||| ||||||| ||| ||||| |||||||||||||||| || ||||| ||||||||    
T  27452653 tttcctaccatggaaaaattaaatttgaccattagattaaataatgaacgcattctta 27452710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 52399046 - 52398973
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    ||||||| ||||||||||| ||  |||||||||||||||| ||| ||| ||||| |||| |||| ||| |||||    
T  52399046 tttcccatcatgggaaagtaaattttgaccattagattaaatagagaatacatttttatgatagtctcccaaca 52398973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 7359890 - 7359842
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||  |||||  ||||||||||||||||||||    
T  7359890 ggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 38336974 - 38337034
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatca 186  Q
    |||||||||||||||||| |||  |||||| ||||||||| ||| ||||| ||| ||||||    
T  38336974 tttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatca 38337034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 55124444 - 55124520
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacatta 202  Q
    ||||||||||||||||| | || |||||| ||||||| | |||  ||||| | | |||||||||| |||||||||||    
T  55124444 tttcccaccatgggaaaataaatattgactattagatcatgtaaagaacatagttttatcatagattctcaacatta 55124520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 27599241 - 27599360
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt-c 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||  ||||| | |||| |    
T  27599241 tttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacaccatatctaa-aatccatcttcttcc 27599339  T
Q  225 ttgcttgcttccaccacctca 245  Q
    ||||||  |||||||||||||    
T  27599340 ttgcttctttccaccacctca 27599360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 27600113 - 27599971
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt-c 224  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||||  || || | |||| |    
T  27600113 tttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctcaacaccatatctaa-aattcatcttcttcc 27600015  T
Q  225 ttgcttgcttccaccacctcattggtctttctctctccttctcta 269  Q
    |||||| |||||| || |||||||| | ||||||||||| |||||    
T  27600014 ttgcttccttcca-catctcattggaccttctctctcctcctcta 27599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 34852557 - 34852607
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtta 146  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  34852557 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagtta 34852607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 12732277 - 12732353
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacatta 202  Q
    ||||||||||||||||||| || |||||||||||||| | |||  ||||| | | ||||||||||||||||||||||    
T  12732277 tttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaacatta 12732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 40905791 - 40905717
Alignment:
Q  138 ggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||  |||||| |||||| || ||  ||||||||| ||||||||||||||||||| ||||||||||||    
T  40905791 ggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacactatatctaacca 40905717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 46757458 - 46757527
Alignment:
Q  130 ccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||| |||||| || |||||||||||||| |||||| ||||| | | ||||||||||| |||||||    
T  46757458 ccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaaca 46757527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 40905061 - 40905145
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaac 210  Q
    ||||| || |||||||||||||  |||| | |||||| |||||  ||||| ||| ||| ||| ||||||||||||||||||||||    
T  40905061 tttcctactatgggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaacattatatctaac 40905145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 42344262 - 42344222
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccat 136  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  42344262 ggtggcatttagggtgggtaggaggaattctttcccaccat 42344222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 46814295 - 46814247
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||    
T  46814295 ggtggtatttaggatgggtaggaggaattctttcccaccatgggaaagt 46814247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 34853382 - 34853333
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtt 145  Q
    |||||||||||||||| |||| |||||  |||||||||||| ||||||||    
T  34853382 ggtggcatttagggtgggtaggaggaagactttcccaccataggaaagtt 34853333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 5004188 - 5004236
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  5004188 ggtgacatttaggatgggtaggaggaattcttttccaccatgggaaagt 5004236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 7677830 - 7677754
Alignment:
Q  123 ttctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    ||||||||||||||||||||||| |   ||  ||||||||||| |   ||||||||||||||||||  |||||||||    
T  7677830 ttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaaca 7677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 30916544 - 30916496
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| |||||    
T  30916544 ggtggcatttagggtgggtaggaagaattctttcccatcatggaaaagt 30916496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 30808651 - 30808734
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaa 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||||    
T  30808651 tttcccaccatgggaaagttaaatttgaccattagattaagtaatgaatacattcttatcatagacactcaacatcatatctaa 30808734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 45331471 - 45331352
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatccaccatctt-c 224  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||  ||||| | |||| |    
T  45331471 tttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacaccatatctaa-aatccatcttcttcc 45331373  T
Q  225 ttgcttgcttccaccacctca 245  Q
    ||||||  |||||||||||||    
T  45331372 ttgcttctttccaccacctca 45331352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 53664212 - 53664316
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| || ||| |||||   | ||||||||||| |||    
T  53664212 ggtggtatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactc 53664311  T
Q  196 aacat 200  Q
    |||||    
T  53664312 aacat 53664316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 45330595 - 45330678
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaa 209  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||||  ||||||||    
T  45330595 tttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactctcaacaccatatctaa 45330678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 30809519 - 30809440
Alignment:
Q  130 ccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaa 209  Q
    |||||||| |||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||||  ||||||||    
T  30809519 ccaccatgagaaagttaaatttgaccactagattaagtaatgaacacatttttatcatagactctcaacaccatatctaa 30809440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 50710461 - 50710386
Alignment:
Q  100 gcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaaca 175  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||    
T  50710461 gcatttaaggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaagtagagaaca 50710386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 53665134 - 53665031
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| ||||||||||||||||||||||||   ||||| || ||||||||||| || |||||| |||||   | ||||||||||| |||    
T  53665134 ggtggcatttagggtgggtagaaggaattctttcccaccataaaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 53665035  T
Q  196 aaca 199  Q
    ||||    
T  53665034 aaca 53665031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 34956326 - 34956400
Alignment:
Q  138 ggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||  |||||| |||||| |||||  ||||||||| ||||||||||||||||||| ||||||||||||    
T  34956326 ggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacactatatctaacca 34956400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 50709034 - 50709108
Alignment:
Q  138 ggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||  |||||| |||||| |||||  ||||||||| ||||||||||||||||||| ||||||||||||    
T  50709034 ggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacactatatctaacca 50709108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 6246809 - 6246888
Alignment:
Q  121 aattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    |||| ||||||||||||||||||||||  ||||||||||||| | |||| ||||| | | ||||||||||| ||||||||    
T  6246809 aattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaacat 6246888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 6680360 - 6680287
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||| |||||||||||||| || ||||||||||||||||||||  ||||| | | |||||||||| ||||||||    
T  6680360 tttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaaca 6680287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 20681722 - 20681770
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  20681722 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagt 20681770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 10421595 - 10421526
Alignment:
Q  130 ccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||| |||  |||||| ||||||||| ||| ||||| ||| ||||||||||| |||||||    
T  10421595 ccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 10421526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 15481073 - 15481138
Alignment:
Q  134 catgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||| |||  |||||| ||||||||| ||| ||||| ||| |||||||||||||||||||    
T  15481073 catgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaaca 15481138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 23574665 - 23574617
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  23574665 ggtggcatttagggtggataggaggaattctttcccaccatggaaaagt 23574617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 34957056 - 34956966
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaaccatcca 216  Q
    ||||| || |||| ||||||||  |||| | |||||| |||||  ||||| ||| ||| ||| |||||||||||||||||||||| |||||    
T  34957056 tttcctactatggaaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaacattatatctaactatcca 34956966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 55511901 - 55511950
Alignment:
Q  95 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    ||||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  55511901 tggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 55511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 38686303 - 38686406
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||| |||||| |||||   | ||||||||||| |||    
T  38686303 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactc 38686402  T
Q  196 aaca 199  Q
    ||||    
T  38686403 aaca 38686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 33802421 - 33802317
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || || ||| |||||   | ||||||||||| |||    
T  33802421 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactc 33802322  T
Q  196 aacat 200  Q
    |||||    
T  33802321 aacat 33802317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 33801499 - 33801602
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctc 195  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| || |||||| |||||   | ||||||||||| |||    
T  33801499 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 33801598  T
Q  196 aaca 199  Q
    ||||    
T  33801599 aaca 33801602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 38687098 - 38686999
Alignment:
Q  101 catttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| || ||||| |||||||| |||||| |||||   | ||||||||||| ||||||||    
T  38687098 catttagggtgggtagaaggaattctttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaacat 38686999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 32551151 - 32551090
Alignment:
Q  101 catttagggtgagtagaaggaattctttcccaccatgggaaagttaaaattgaccattagat 162  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||    
T  32551151 catttagggtgggtagaaggaattctttcccatcataggaaagtaaatattgaccattagat 32551090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 43925036 - 43924963
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||| |||||||||  |||||| ||||||||| ||| ||||| ||| ||||||||||| |||||||    
T  43925036 tttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 43924963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 43924520 - 43924593
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||||||||||| |||  |||||| ||||||||| ||| ||||| ||| |||||||| || |||||||    
T  43924520 tttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaaca 43924593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 42638148 - 42638196
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  42638148 ggtggcatttagggtgggtaggaggaattcttttccaccatgagaaagt 42638196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 12350677 - 12350599
Alignment:
Q  121 aattctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||| |||||||||||||||||  |||  ||||||||||||| | |||| ||||| | | ||||||||||| |||||||    
T  12350677 aattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 12350599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 39257664 - 39257738
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    |||||||||||||||||| |||  |||||||||| || |||||| ||||| | | ||||||||||  ||||||||    
T  39257664 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacat 39257738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 43971308 - 43971382
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    |||||||||||||||||| |||  |||||||||| || |||||| ||||| | | ||||||||||  ||||||||    
T  43971308 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacat 43971382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 11932 - 11850
Alignment:
Q  130 ccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||| ||| ||||||||| || ||||   ||||||||||||    
T  11932 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatagtctttcaatgctatatctaacca 11850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 44227 - 44301
Alignment:
Q  138 ggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaacca 212  Q
    ||||||||||  |||||| |||||| || ||  ||||||||| ||||||||||||||||||| ||||||||||||    
T  44227 ggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacactatatctaacca 44301  T

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Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 44957 - 44873
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacattatatctaac 210  Q
    ||||| || |||||||||||||  |||| | |||||| |||||  ||||| ||| ||| ||| ||||||||||||||||||||||    
T  44957 tttcctactatgggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaacattatatctaac 44873  T

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Target: scaffold0041; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27248 - 27324
Alignment:
Q  123 ttctttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    |||||||||| |||||||||||| |   || |||||||||||| |   ||||||||||||||||||  |||||||||    
T  27248 ttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaaca 27324  T

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Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 12877 - 12804
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaaca 199  Q
    ||||||||||||||||||||||  ||||||||||||| || ||| ||||| | | ||||||||||| |||||||    
T  12877 tttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaaca 12804  T

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Target: scaffold0189; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 12214 - 12288
Alignment:
Q  126 tttcccaccatgggaaagttaaaattgaccattagattaagtagtgaacacattcttatcatagactctcaacat 200  Q
    |||||||||||| |||| ||||  |||||| ||||||||| ||| ||||| ||| ||||||||||| ||||||||    
T  12214 tttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacat 12288  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 34716162 - 34716206
Alignment:
Q  93 tatggtggcatttagggtgagtagaaggaattctttcccaccatg 137  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  34716162 tatggtggcatttagggtgggtagagggaatactttcccaccatg 34716206  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 10607392 - 10607351
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatg 137  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  10607392 ggtggcatttagggtgggtagagggaatactttcccaccatg 10607351  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 19063660 - 19063709
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtt 145  Q
    |||||||||| ||||| |||| |||||| |||||| ||||||||||||||    
T  19063660 ggtggcattttgggtgggtaggaggaatactttccaaccatgggaaagtt 19063709  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 20687464 - 20687512
Alignment:
Q  96 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 144  Q
    |||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  20687464 ggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 20687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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