View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_high_8 (Length: 430)

Name: NF1520_high_8
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_high_8
NF1520_high_8
[»] chr6 (7 HSPs)
chr6 (14-414)||(2548021-2548421)
chr6 (13-134)||(2545276-2545392)
chr6 (309-342)||(24836308-24836341)
chr6 (309-341)||(5554874-5554906)
chr6 (309-341)||(32843424-32843456)
chr6 (313-341)||(32975907-32975935)
chr6 (313-341)||(33116534-33116562)
[»] chr2 (3 HSPs)
chr2 (309-370)||(10150657-10150716)
chr2 (309-341)||(9478228-9478260)
chr2 (309-341)||(13864579-13864611)
[»] chr4 (2 HSPs)
chr4 (309-345)||(24936235-24936271)
chr4 (310-341)||(27321941-27321972)
[»] chr8 (2 HSPs)
chr8 (309-339)||(9928187-9928217)
chr8 (309-341)||(1433474-1433506)
[»] chr7 (7 HSPs)
chr7 (310-339)||(25507282-25507311)
chr7 (310-339)||(25558299-25558328)
chr7 (310-339)||(25558497-25558526)
chr7 (308-341)||(27389312-27389345)
chr7 (309-342)||(27481403-27481436)
chr7 (309-341)||(1431417-1431449)
chr7 (309-341)||(44241789-44241821)
[»] chr5 (2 HSPs)
chr5 (310-339)||(10907310-10907339)
chr5 (309-341)||(35135771-35135803)
[»] chr3 (3 HSPs)
chr3 (309-338)||(24605125-24605154)
chr3 (310-338)||(1809945-1809973)
chr3 (309-341)||(24158611-24158643)
[»] chr1 (2 HSPs)
chr1 (308-341)||(52190067-52190100)
chr1 (309-341)||(26679203-26679235)


Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 2548021 - 2548421
Alignment:
Q  14 atatctctattagctcttaaaagtagctttgacaatgagatgtatgcagcataattgataatgtacctggcctacttatggcaaaaaggacgtgtttggg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548021 atatctctattagctcttaaaagtagctttgacaatgagatgtatgcagcataattgataatgtacctggcctacttatggcaaaaaggacgtgtttggg 2548120  T
Q  114 ttaaacaatttaaatatgagctcattcaataagctatttgagagagtttaattaggtacttattcttaagttgaaaacaacttatgagcatctgataagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548121 ttaaacaatttaaatatgagctcattcaataagctatttgagagagtttaattaggtacttattcttaagttgaaaacaacttatgagcatctgataagt 2548220  T
Q  214 tagttgagcttacctactgacataaacattcataatattgtttgagacattttttgacaagttctccacataatagaatagcttctaaaacaaatttata 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548221 tagttgagcttacctactgacataaacattcataatattgtttgagacattttttgacaagttctccacataatagaatagcttctaaaacaaatttata 2548320  T
Q  314 gaaataacttatacataaacacttatatataataaacgtttaattaagttatttatcgacacaatcaaaatagtatactaatagatagtaatataagtgc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2548321 gaaataacttatacataaacacttatatataataaacgtttaattaagttatttatccacacaatcaaaatagtatactaatagatagtaatataagtgc 2548420  T
Q  414 t 414  Q
    |    
T  2548421 t 2548421  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 2545276 - 2545392
Alignment:
Q  13 aatatctctattagctcttaaaagtagctttgacaatgagatgtatgcagcataattgataatgtacctggcctacttatggcaaaaaggacgtgtttgg 112  Q
    ||||| ||||| |||||||||||| |||||||||||||||||| ||| |||||||||||     | ||||| ||| | ||||||| ||  ||  ||||||    
T  2545276 aatatatctataagctcttaaaagcagctttgacaatgagatgcatgtagcataattga-----tgcctggtctattcatggcaataaaaacaagtttgg 2545370  T
Q  113 gttaaacaatttaaatatgagc 134  Q
    ||||||||||||||||||||||    
T  2545371 gttaaacaatttaaatatgagc 2545392  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 24836308 - 24836341
Alignment:
Q  309 ttatagaaataacttatacataaacacttatata 342  Q
    |||||||||||||||||||||||| |||||||||    
T  24836308 ttatagaaataacttatacataaatacttatata 24836341  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 5554874 - 5554906
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||||||||||||||||||| |||||    
T  5554874 ttatagaaataacttatacataaacacgtatat 5554906  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 32843424 - 32843456
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||||||||||||||| |||||||||    
T  32843424 ttatagaaataacttatacataagcacttatat 32843456  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 32975935 - 32975907
Alignment:
Q  313 agaaataacttatacataaacacttatat 341  Q
    |||||||||||||||||||||||||||||    
T  32975935 agaaataacttatacataaacacttatat 32975907  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 33116562 - 33116534
Alignment:
Q  313 agaaataacttatacataaacacttatat 341  Q
    |||||||||||||||||||||||||||||    
T  33116562 agaaataacttatacataaacacttatat 33116534  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 10150716 - 10150657
Alignment:
Q  309 ttatagaaataacttatacataaacacttatatataataaacgtttaattaagttatttatc 370  Q
    ||||||||||||||||||||||||||||||  ||||||||  | ||||||||||| ||||||    
T  10150716 ttatagaaataacttatacataaacactta--tataataagtgcttaattaagttgtttatc 10150657  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 9478260 - 9478228
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||| |||||||||||||||||||||    
T  9478260 ttatagaaatagcttatacataaacacttatat 9478228  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 13864611 - 13864579
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||| |||||||||||||||||||||    
T  13864611 ttatagaaatagcttatacataaacacttatat 13864579  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 24936271 - 24936235
Alignment:
Q  309 ttatagaaataacttatacataaacacttatatataa 345  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24936271 ttatagaaataacttatacataaccacttatatataa 24936235  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 27321941 - 27321972
Alignment:
Q  310 tatagaaataacttatacataaacacttatat 341  Q
    ||||||||||||||||||||||||||||||||    
T  27321941 tatagaaataacttatacataaacacttatat 27321972  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 9928217 - 9928187
Alignment:
Q  309 ttatagaaataacttatacataaacacttat 339  Q
    |||||||||||||||||||||||||||||||    
T  9928217 ttatagaaataacttatacataaacacttat 9928187  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 1433506 - 1433474
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||||||||||||||| |||||||||    
T  1433506 ttatagaaataacttatacataaccacttatat 1433474  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 25507311 - 25507282
Alignment:
Q  310 tatagaaataacttatacataaacacttat 339  Q
    ||||||||||||||||||||||||||||||    
T  25507311 tatagaaataacttatacataaacacttat 25507282  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 25558299 - 25558328
Alignment:
Q  310 tatagaaataacttatacataaacacttat 339  Q
    ||||||||||||||||||||||||||||||    
T  25558299 tatagaaataacttatacataaacacttat 25558328  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 25558497 - 25558526
Alignment:
Q  310 tatagaaataacttatacataaacacttat 339  Q
    ||||||||||||||||||||||||||||||    
T  25558497 tatagaaataacttatacataaacacttat 25558526  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 27389345 - 27389312
Alignment:
Q  308 tttatagaaataacttatacataaacacttatat 341  Q
    |||||||||||| |||||||||||||||||||||    
T  27389345 tttatagaaatagcttatacataaacacttatat 27389312  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 27481403 - 27481436
Alignment:
Q  309 ttatagaaataacttatacataaacacttatata 342  Q
    ||||||||||| ||||||||||||||||||||||    
T  27481403 ttatagaaatagcttatacataaacacttatata 27481436  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 1431417 - 1431449
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    |||| ||||||||||||||||||||||||||||    
T  1431417 ttatggaaataacttatacataaacacttatat 1431449  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 44241821 - 44241789
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    |||||||||||||||||||||| ||||||||||    
T  44241821 ttatagaaataacttatacatacacacttatat 44241789  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 10907339 - 10907310
Alignment:
Q  310 tatagaaataacttatacataaacacttat 339  Q
    ||||||||||||||||||||||||||||||    
T  10907339 tatagaaataacttatacataaacacttat 10907310  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 35135771 - 35135803
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||| |||||||||||||||||||||    
T  35135771 ttatagaaatatcttatacataaacacttatat 35135803  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 24605125 - 24605154
Alignment:
Q  309 ttatagaaataacttatacataaacactta 338  Q
    ||||||||||||||||||||||||||||||    
T  24605125 ttatagaaataacttatacataaacactta 24605154  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 1809973 - 1809945
Alignment:
Q  310 tatagaaataacttatacataaacactta 338  Q
    |||||||||||||||||||||||||||||    
T  1809973 tatagaaataacttatacataaacactta 1809945  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 24158611 - 24158643
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    ||||||||||||||||||||||| |||||||||    
T  24158611 ttatagaaataacttatacataagcacttatat 24158643  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 52190100 - 52190067
Alignment:
Q  308 tttatagaaataacttatacataaacacttatat 341  Q
    |||||||||| |||||||||||||||||||||||    
T  52190100 tttatagaaaaaacttatacataaacacttatat 52190067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 26679235 - 26679203
Alignment:
Q  309 ttatagaaataacttatacataaacacttatat 341  Q
    |||||||||||||||| ||||||||||||||||    
T  26679235 ttatagaaataacttacacataaacacttatat 26679203  T

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