View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_1 (Length: 539)
Name: NF1520_low_1
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 24 - 523
Target Start/End: Complemental strand, 37239779 - 37239279
Alignment:
| Q |
24 |
cagctaataaacaaacatgttttctacaattaagaaagttgaagatagtttataatccatggacatactaaaagggttatacaaatatcatttgttatnn |
123 |
Q |
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| T |
37239779 |
cagctaataaacaaacatgttttctacaattaagaaagttgaagatagtttataatccatggacatactaaaagggttatacaaatatcatttgttataa |
37239680 |
T |
|
| Q |
124 |
nnnnnnnttgtacaatcatctagtcatatcccattttataatataacaaagtgacatatgtattgtgagatgtgaatgaatcactgaatttttgttgtac |
223 |
Q |
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| T |
37239679 |
aaaaaa-ttgtacaatcatctggtcatatcccattttataatataacaaagtgacatatgtattgtgaaatgtgaatgaatcactgaatttttgttgtac |
37239581 |
T |
|
| Q |
224 |
ttttcgtactaatattaaactcaaaatttaatacaaacaaatcatactctggtggcatgtatccaaatgttcccacaagacgagtgtgaagtgtcgagtt |
323 |
Q |
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| T |
37239580 |
tttttgtactaatattaaactcaaaatttaatacaaacgaatcatactctggtggcatgtatccaaatgttcccacaagacgagtgtgaagtgtcgagtt |
37239481 |
T |
|
| Q |
324 |
tccaacttcaataagtttggtcaagccaaaatcagcaacctgaattcaaaaccattc--agagttaattaatgtaaaagaagaagtgataaattaaaatt |
421 |
Q |
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| T |
37239480 |
tccaacttcaataagtttggtcaagccaaaatcagcaacctgaattcaaaaccattcatagagttaattaatgtaaaagaagaagtgataaattaaaatt |
37239381 |
T |
|
| Q |
422 |
tataatatagatcattaagattggtcaaattgcaacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcgatggatataaaca |
521 |
Q |
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| T |
37239380 |
tataatatagatcattaagattggtcaaattgcaacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcgatggatataaaca |
37239281 |
T |
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| Q |
522 |
gg |
523 |
Q |
| |
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|| |
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| T |
37239280 |
gg |
37239279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 266 - 517
Target Start/End: Complemental strand, 37315991 - 37315742
Alignment:
| Q |
266 |
catactctggtggcatgtatccaaatgttcccacaagacgagtgtgaagtgtcgagtttccaacttcaataagtttggtcaagccaaaatcagcaacctg |
365 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
37315991 |
catactctggtggcatgtatccaaatgttccgacaagacgagtctgaagtgtggagtttccaacttcaagaagtttggtcaagccaaaatctgcaacctg |
37315892 |
T |
|
| Q |
366 |
aattca-aaaccattcagag-ttaattaatgtaaaagaag-aagtgataaattaaaatttataatatagatcattaagattggtcaaattgcaacctttc |
462 |
Q |
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| T |
37315891 |
aatttagaaaccatgtatagtttaattaatattaaagaagaaaatgagaaattggagcaaaaattat-----attaagatttgtcacaaagttacctttc |
37315797 |
T |
|
| Q |
463 |
cacgcaaatttttgtctatcaatatatttgctgattttacgtcgcgatggatata |
517 |
Q |
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| T |
37315796 |
cacgtaagtttttgtctatcaatatatttgctgattttacatcacgatggatata |
37315742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 36199838 - 36199739
Alignment:
| Q |
268 |
tactctggtggcatgtatccaaatgttcccacaagacga---gtgtgaagtgtcgagtttccaacttcaataagtttggtcaagccaaaatcagcaacct |
364 |
Q |
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|||||||| ||||||||||||||||| || ||||||||| ||| |||| | |||| |||||||||| | ||||||||||| |||||||||||||||| |
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| T |
36199838 |
tactctgggggcatgtatccaaatgtaccaacaagacgaccggtgggaagcgacgagcttccaacttccgtcagtttggtcaatccaaaatcagcaacct |
36199739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 36199664 - 36199595
Alignment:
| Q |
454 |
caacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcgatggatataaacagg |
523 |
Q |
| |
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|||||||||| || || || |||||||||||||||||||||| |||| ||| ||||| ||||| ||||| |
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| T |
36199664 |
caacctttccccggaagttcttgtctatcaatatatttgctggctttatgtcacgatgaatatatacagg |
36199595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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