View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_10 (Length: 403)
Name: NF1520_low_10
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_10 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 47782204 - 47781830
Alignment:
| Q |
14 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatact |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47782204 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaatagttgtgttactaagatact |
47782105 |
T |
|
| Q |
114 |
aagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47782104 |
aagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatg |
47782005 |
T |
|
| Q |
214 |
catttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47782004 |
catttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcttgtgtgagattgaatctggaacctattaggcatttgcgacagtcttgag |
47781905 |
T |
|
| Q |
314 |
gattaatgtctcctctacatattccaatgacgtttactttgtcattgttttggccatagttggtgttgtagaaac |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47781904 |
gattaatgtctcctctacatattccaatgacgtttactttgtcattgttttggccatagttggtgttgtagaaac |
47781830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 47788418 - 47788044
Alignment:
| Q |
14 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatact |
113 |
Q |
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|||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| | |
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| T |
47788418 |
tactaggacccggcatttttcccacaacatacttacgatgtgagtcaccatttatagccttgcttcttaaatcattcaacaattgttttaccaagatatt |
47788319 |
T |
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| Q |
114 |
aagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacata |
213 |
Q |
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|| |||||||||||||||||| |||||| ||||||| | |||||| || |||||||||||||| || | ||| |||||||||||||||||||||||| |
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| T |
47788318 |
aaattgatctgccattgttgcattgttcaagttccatgcaaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacata |
47788219 |
T |
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| Q |
214 |
catttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgag |
313 |
Q |
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| T |
47788218 |
catttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcttgtgttagattgaatttggaaccaattaggcatttgcgacaatcttgag |
47788119 |
T |
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| Q |
314 |
gattaatgtctcctctacatattccaatgacgtttactttgtcattgttttggccatagttggtgttgtagaaac |
388 |
Q |
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| T |
47788118 |
gattaatgtctcctctacatattccaatggcgtttactgtgtcattgttttggccatagttggtgttgtagaaac |
47788044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 47811733 - 47811356
Alignment:
| Q |
14 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatact |
113 |
Q |
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|||||||||| ||| | ||||| ||| ||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |||| ||| | || | |
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| T |
47811733 |
tactaggacctggcaaagttcctacagcatacttacgatgtgagtcaccatttatagccttgttttttaaatcattcaacaattgttttatcacactatt |
47811634 |
T |
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| Q |
114 |
aagttgatctgccattgttgcgttgttcgagttccac-atagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacat |
212 |
Q |
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| ||||||||||| ||||| |||||| ||||||| | | |||| || |||| |||||| | ||||||||||| ||||||||||||||||| | ||| |
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| T |
47811633 |
gaattgatctgccaaagttgcattgttcacgttccaccaaattata-gcaggccacatttcgctgaggcctaatatcgaacggtctgaataacgcagcat |
47811535 |
T |
|
| Q |
213 |
acatttctcatc---ctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtct |
309 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||| |||| | |||| |||| | || ||||||||||| ||| |
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| T |
47811534 |
gcatttctgatcagcctcgtaccatccaattgcttcttttttgtttggacatgcttctgttagataggattttgaactaacgagacatttgcgacaatct |
47811435 |
T |
|
| Q |
310 |
tgaggattaatgtctcctctacatattccaatgacgtttactttgtcattgttttggccatagttggtgttgtagaaac |
388 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || || || |||||||||| |
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| T |
47811434 |
tcaggattaatgtctcctctacatattccaatgaggtttactttgtcctcgttttggccgtaatttgtattgtagaaac |
47811356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 47778144 - 47778050
Alignment:
| Q |
166 |
ccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggaca |
260 |
Q |
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|||||||| || |||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
47778144 |
ccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggaca |
47778050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 6523810 - 6523718
Alignment:
| Q |
184 |
aatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattg |
276 |
Q |
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||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgtgagattg |
6523718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 6521836 - 6521743
Alignment:
| Q |
156 |
ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
249 |
Q |
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|||||| || ||||||||||| || || ||||| ||||||| ||| ||||| ||||| |||| ||||| | |||||||||||||||||||||| |
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| T |
6521836 |
ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttctttt |
6521743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 47760265 - 47760314
Alignment:
| Q |
322 |
tctcctctacatattccaatgacgtttactttgtcattgttttggccata |
371 |
Q |
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| T |
47760265 |
tctcctctacagagtccaatggcgtttactttgtcagtgttttggccata |
47760314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6506946 - 6506992
Alignment:
| Q |
203 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
249 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
6506946 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
6506992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 971 - 1017
Alignment:
| Q |
203 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
249 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
971 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
1017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 8624 - 8670
Alignment:
| Q |
203 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
249 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
8624 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
8670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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