View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1520_low_14 (Length: 338)
Name: NF1520_low_14
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 15890609 - 15890443
Alignment:
| Q |
1 |
tctaaattgatgtccaagacagagaaaactcattttcaattatataatccaaaaatttcatagacatttcataagatggaaaaggaataagtccaataat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15890609 |
tctaaattgatgtccaaaacagagaaaactcattttcaattatataatccaaaaatttcatggacatttcataagatggaaaaggaataagtccaataac |
15890510 |
T |
|
| Q |
101 |
aaatccaactctcactcacacagtttccatgtagcttgtgtgtttcagttttatccacaaacttaggaact |
171 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15890509 |
aaatccaactc----tcacacagtttccatgtagcttgtgtgtttcagttttatccacaaacttaggaact |
15890443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 15890411 - 15890276
Alignment:
| Q |
203 |
catcatacaaaatcaatgtcagccaatcaagaaagaaaatactttctatcatcatctttggcacaaaacttcttccaaaaactaaattatcagtttcaca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15890411 |
catcatacaaaatcaatgtcagccaatcaagaaagaaaatactttctatcatcatctttggcacaaaacttcttccaaaaactaaattatcagtttcaca |
15890312 |
T |
|
| Q |
303 |
attgtagctcattattattcttatggtagctttctg |
338 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15890311 |
attatagctcattattattcttatggtagctttctg |
15890276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University