View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_15 (Length: 333)
Name: NF1520_low_15
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 28081903 - 28081796
Alignment:
| Q |
16 |
aataatgataaaacaaaaatagttcactttagctactacatttctttctccagcagacatgaagaaaagatgttccctaattctacaactccatattaca |
115 |
Q |
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| T |
28081903 |
aataatgataaaacaaaaatagttcactttagctactacatttctttctccagcagacatgaagaaaagatgttccctaattctacaactccatattaca |
28081804 |
T |
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| Q |
116 |
tagccaat |
123 |
Q |
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|||||||| |
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| T |
28081803 |
tagccaat |
28081796 |
T |
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Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 28081694 - 28081601
Alignment:
| Q |
224 |
ttccagaaaatttaatctccttgtgcatcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28081694 |
ttccagaaaatttaatctccttgtgcatcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaa |
28081601 |
T |
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