View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_low_18 (Length: 303)

Name: NF1520_low_18
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_low_18
NF1520_low_18
[»] chr8 (1 HSPs)
chr8 (1-293)||(2778038-2778331)
[»] scaffold0283 (1 HSPs)
scaffold0283 (213-260)||(18381-18428)
[»] chr6 (1 HSPs)
chr6 (214-265)||(30926811-30926862)
[»] chr5 (2 HSPs)
chr5 (213-260)||(42724407-42724454)
chr5 (208-265)||(33608499-33608556)
[»] chr1 (1 HSPs)
chr1 (213-261)||(43018464-43018512)
[»] chr2 (2 HSPs)
chr2 (224-271)||(13912798-13912845)
chr2 (208-255)||(33502891-33502938)
[»] chr3 (3 HSPs)
chr3 (215-265)||(7664778-7664828)
chr3 (208-262)||(20484028-20484082)
chr3 (208-268)||(829889-829948)
[»] chr4 (1 HSPs)
chr4 (208-264)||(18597035-18597091)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2778038 - 2778331
Alignment:
Q  1 tgtggaacgtaaatcatctgcgagagttttgacattgaacaggcccaaacaattgaatgctctctctttttatatggtactatttcataattcatttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2778038 tgtggaacgtaaatcatctgcgagagttttgacattgaacaggcccaaacaattgaatgctctctctttttatatggtactatttcataattcatttcat 2778137  T
Q  101 gcattgctttatttcttcaatttttcta-ttttgagtagtaacatatgatacaaaactgtacctttgattccgttagttaaaattgacatatttagtttg 199  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2778138 gcattgctttatttcttcaatttttctacttttgagtagtaacatatgatacaaaactgtacctttgattccgttagttaaaattgacatatttagtttg 2778237  T
Q  200 tatcctgtagaactgattctaacttgaagctagaatttcaaattttttattctagaattgattttttcacacggtgtatacttggttgtctctg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2778238 tatcctgtagaactgattctaacttgaagctagaatttcaaattttttattctagaattgattttttcacacggtgtatacttggttgtctctg 2778331  T

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Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 18381 - 18428
Alignment:
Q  213 tgattctaacttgaagctagaatttcaaattttttattctagaattga 260  Q
    |||||||||||||||||||||| || || |||||||||||||||||||    
T  18381 tgattctaacttgaagctagaaattgaagttttttattctagaattga 18428  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 30926862 - 30926811
Alignment:
Q  214 gattctaacttgaagctagaatttcaaattttttattctagaattgattttt 265  Q
    ||||||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  30926862 gattctaacttgaagctagaaattggagttttttattctagaattgattttt 30926811  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 42724407 - 42724454
Alignment:
Q  213 tgattctaacttgaagctagaatttcaaattttttattctagaattga 260  Q
    |||||||||||||||||||||| || || |||||||||||||||||||    
T  42724407 tgattctaacttgaagctagaaattgaagttttttattctagaattga 42724454  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 33608499 - 33608556
Alignment:
Q  208 agaactgattctaacttgaagctagaatttcaaattttttattctagaattgattttt 265  Q
    |||| |||||||||||||||||||||| ||  | ||||| |||||||||| |||||||    
T  33608499 agaattgattctaacttgaagctagaagttggagtttttcattctagaatggattttt 33608556  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 43018464 - 43018512
Alignment:
Q  213 tgattctaacttgaagctagaatttcaaattttttattctagaattgat 261  Q
    |||||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  43018464 tgattctaacatgaagctagaatttggaatttttaattctagaattgat 43018512  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 13912798 - 13912845
Alignment:
Q  224 tgaagctagaatttcaaattttttattctagaattgattttttcacac 271  Q
    ||||||||||||||  ||||||||||||||||||| |||||| |||||    
T  13912798 tgaagctagaatttgtaattttttattctagaattaatttttacacac 13912845  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 33502938 - 33502891
Alignment:
Q  208 agaactgattctaacttgaagctagaatttcaaattttttattctaga 255  Q
    |||| |||||||||||||||||||||||||||| ||||| | ||||||    
T  33502938 agaattgattctaacttgaagctagaatttcaagtttttgagtctaga 33502891  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 7664778 - 7664828
Alignment:
Q  215 attctaacttgaagctagaatttcaaattttttattctagaattgattttt 265  Q
    |||||||||||||| || |||||||| ||||| | ||||||||||||||||    
T  7664778 attctaacttgaagttataatttcaagtttttgaatctagaattgattttt 7664828  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 20484082 - 20484028
Alignment:
Q  208 agaactgattctaacttgaagctagaatttcaaattttttattctagaattgatt 262  Q
    |||| ||||||||| |||||||||||||||  ||||||| ||||| |||||||||    
T  20484082 agaattgattctaatttgaagctagaatttagaatttttcattcttgaattgatt 20484028  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 829889 - 829948
Alignment:
Q  208 agaactgattctaacttgaagctagaatttcaaattttttattctagaattgattttttca 268  Q
    |||| |||||| ||||| ||||||||| ||  | |||||||||||||||||||||||||||    
T  829889 agaattgattcaaactt-aagctagaaattggagttttttattctagaattgattttttca 829948  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 18597035 - 18597091
Alignment:
Q  208 agaactgattctaacttgaagctagaatttcaaattttttattctagaattgatttt 264  Q
    |||| ||||||||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  18597035 agaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

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