View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_27 (Length: 234)
Name: NF1520_low_27
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_27 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 3257055 - 3256827
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3257055 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgagagaattggcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
3256956 |
T |
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| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3256955 |
tgaagatagcaagcttaaaaaaattgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccagtatttatatatgattctaa |
3256856 |
T |
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| Q |
206 |
ttcttacttacaaaattttgatgatggtt |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3256855 |
ttcttacttacaaaattttgatgatggtt |
3256827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 3280189 - 3279962
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
3280189 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgagagaattggaaacgatcctgttgaatgtgtcaatgaactcatggcaagaa |
3280090 |
T |
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| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
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| T |
3280089 |
tgaagatagcaagcttaaaaaaattgtggaagaagattatgaaagaaaagaagaggaaaatatttaaatcgccttcaccagtatttctatatgattctaa |
3279990 |
T |
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| Q |
206 |
ttcttacttacaaaattttgatgatggt |
233 |
Q |
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| T |
3279989 |
ttcttacttacaaaattttgatgatggt |
3279962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 3296058 - 3295830
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| ||||||| |||| |
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| T |
3296058 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaacttatgagagaattggcaatgatcctattgtatgtgtcaatgaatttatggctagaa |
3295959 |
T |
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| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
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|||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| | || || || ||| ||||||||||| |
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| T |
3295958 |
tgaagatatcaagcttgaaaaatttgtggaagaagatcaagaaagaaaagaaaaggagaatatttacatcatcttctcccgtgtttcaatatgattctag |
3295859 |
T |
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| Q |
206 |
ttcttacttacaaaattttgatgatggtt |
234 |
Q |
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|| || |||||||||||||||||||||| |
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| T |
3295858 |
ctcatatttacaaaattttgatgatggtt |
3295830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 3290113 - 3289885
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||| | |||||||||| |
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| T |
3290113 |
aattgcaactgtctaagctcaagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaa |
3290014 |
T |
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| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
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| T |
3290013 |
taaagatatcaagcttaaaaaaattgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttg |
3289914 |
T |
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| Q |
206 |
ttcttacttacaaaattttgatgatggtt |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3289913 |
ctcttacttacaaaattttgatgatggtt |
3289885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3288036 - 3287825
Alignment:
| Q |
15 |
tgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaatgaagatag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| || ||||||||| |||||| ||||||||||| | |
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| T |
3288036 |
tgtctaggctcaagaaacaactgcatttggtcaagttatgagagaattggcaacgaccctgttgtatttgtcaatgagtttatggtcagaatgaagatcg |
3287937 |
T |
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| Q |
115 |
caagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattcta--attcttac |
212 |
Q |
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||||||| || ||||||||||| ||||||||||| ||||||| ||| |||||||| || |||| || ||| |||||||| ||| |||||||| |
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| T |
3287936 |
caagcttagaaaaattatggaagaagatcaagaaagaaaaaaagaggataatttttagatccccttcacttgtgtttctatatgatcctagtattcttac |
3287837 |
T |
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| Q |
213 |
ttacaaaatttt |
224 |
Q |
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|||||||||||| |
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| T |
3287836 |
ttacaaaatttt |
3287825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 3250848 - 3250620
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
| |
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|||| ||| |||||| || |||||||| || |||||| ||||||||||| |||| || || | || ||||||| ||||||||||||| | ||| |||| |
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| T |
3250848 |
aattacaattgtctaagcacaagaaaccacagcattttgtcaagttatgagagacttggctatgaccctattgtatgtgtcaatgaattcatgagcagaa |
3250749 |
T |
|
| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
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|||||||||||||||| ||||||| |||||| |||| ||| || ||||||||||| |||||||| | ||||| || |||||||||||| |||| |
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| T |
3250748 |
tgaagatagcaagcttgaaaactttgtggaggaagatcaagagagagaaaaagaggagaatttttagatcatcttcacctgtgtttatatatgatcctaa |
3250649 |
T |
|
| Q |
206 |
ttcttacttacaaaattttgatgatggtt |
234 |
Q |
| |
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||||||||||| ||||| |||||||||| |
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| T |
3250648 |
ctcttacttacagaatttcgatgatggtt |
3250620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 3284954 - 3284729
Alignment:
| Q |
6 |
aattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgcgagaattagcaacgatcctattgaatgtgtcaatgaacttatggcaagaa |
105 |
Q |
| |
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|||||||||||||||||| | |||||||| ||| |||||||| |||| || |||| || | || ||||||| ||||||||||||| || | | |||| |
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| T |
3284954 |
aattgcaactgtctaggcaccagaaacaa---catctggtcaaggtatgagaaaattggccatgagcctattgtatgtgtcaatgaatttgtcactagaa |
3284858 |
T |
|
| Q |
106 |
tgaagatagcaagcttnnnnnnnttgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccggtatttatatatgattctaa |
205 |
Q |
| |
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||||| | || || |||||||||||||| || | | |||||||||||||||| |||||||| | ||||| |||||| |||||||| | |
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| T |
3284857 |
ctaagatgacgaggttgaaaacattgtggaagaagatcaatagacaaaagaagaggagaatttttagatcatcttcacccgtatttttatatgatcgttg |
3284758 |
T |
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| Q |
206 |
ttcttacttacaaaattttgatgatggtt |
234 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
3284757 |
ttcttacttacaaaactttgatgatggtt |
3284729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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